cmat#

Module for calculating coancestry and kinship relationship matrices.

Modules

pybrops.popgen.cmat.CoancestryMatrix

Module defining basal coancestry matrix interfaces and associated error checking routines.

pybrops.popgen.cmat.DenseCoancestryMatrix

Module providing dense coancestry matrix implementations and associated error checking routines.

pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix

Module providing an implementation for a dense generalized weighted genomic relationship matrix.

pybrops.popgen.cmat.DenseMolecularCoancestryMatrix

Module providing a dense coancestry matrix implementation for identity by state and associated error checking routines.

pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix

Module providing a dense coancestry matrix implementation using the VanRaden method and associated error checking routines.

pybrops.popgen.cmat.DenseYangCoancestryMatrix

Module providing a dense coancestry matrix implementation using the Yang et al. (2010) method and associated error checking routines.

pybrops.popgen.cmat.fcty

Module containing Coancestry Matrix Factory interfaces and implementations