PopulationAlleleFrequencyDistanceSelectionProblemMixin#

class pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin[source]#

Bases: object

Helper class to implement properties common to MOGS.

Methods

from_gmat_gpmod

rtype:: PopulationAlleleFrequencyDistanceSelectionProblemMixin

Attributes

`geno`	Genotype matrix of shape (n,p) in {0,1,2} format.
`mkrwt`	Marker weights.
`nlatent`	Number of latent variables.
`ploidy`	ploidy.
`tfreq`	Target allele frequency.
`thet`	Whether the target allele frequency is heterozygous.
`tmajor`	Whether the target allele frequency is fixation of a major allele.
`tminor`	Whether the target allele frequency is fixation of a minor allele.

property geno: ndarray#: Genotype matrix of shape (n,p) in {0,1,2} format.

property mkrwt: ndarray#: Marker weights.

property nlatent: Integral#: Number of latent variables.

property ploidy: Integral#: ploidy.

property tfreq: ndarray#: Target allele frequency.

property thet: ndarray#: Whether the target allele frequency is heterozygous.

property tmajor: ndarray#: Whether the target allele frequency is fixation of a major allele.

property tminor: ndarray#: Whether the target allele frequency is fixation of a minor allele.