Skip to main content
Ctrl+K

pybrops 1.0.2 documentation

  • Getting Started
  • Fundamentals
  • Standard Usage
  • Advanced Usage
  • Examples
    • Contributing
    • Frequently Asked Questions
    • API reference
  • Getting Started
  • Fundamentals
  • Standard Usage
  • Advanced Usage
  • Examples
    • Contributing
    • Frequently Asked Questions
    • API reference

Section Navigation

  • breed
    • arch
      • BreedingEdge
        • BreedingEdge
        • check_is_BreedingEdge
      • BreedingGraph
        • BreedingGraph
        • check_is_BreedingGraph
      • BreedingNode
        • BreedingNode
        • check_is_BreedingNode
      • BreedingProgram
        • BreedingProgram
        • check_is_BreedingProgram
      • EmigrationOperator
        • EmigrationOperator
        • check_is_EmigrationOperator
      • GermplasmBank
        • GermplasmBank
        • check_is_GermplasmBank
      • ImmigrationOperator
        • ImmigrationOperator
        • check_is_ImmigrationOperator
      • RecurrentSelectionBreedingProgram
        • RecurrentSelectionBreedingProgram
        • check_is_RecurrentSelectionBreedingProgram
    • op
      • eval
        • EvaluationOperator
      • init
        • InitializationOperator
      • log
        • Logbook
      • mate
        • MatingOperator
      • psel
        • ParentSelectionOperator
      • ssel
        • SurvivorSelectionOperator
    • prot
      • bv
        • BreedingValueProtocol
        • MeanPhenotypicBreedingValue
        • TrueBreedingValue
      • gt
        • DenseMaskedPhasedGenotyping
        • DenseMaskedUnphasedGenotyping
        • DenseUnphasedGenotyping
        • GenotypingProtocol
      • mate
        • FourWayCross
        • FourWayDHCross
        • MatingProtocol
        • SelfCross
        • ThreeWayCross
        • ThreeWayDHCross
        • TwoWayCross
        • TwoWayDHCross
        • util
      • pt
        • G_E_Phenotyping
        • PhenotypingProtocol
        • TruePhenotyping
      • sel
        • BinaryMateSelectionProtocol
        • BinarySelectionProtocol
        • EstimatedBreedingValueSelection
        • ExpectedMaximumBreedingValueSelection
        • FamilyEstimatedBreedingValueSelection
        • GeneralizedWeightedGenomicEstimatedBreedingValueSelection
        • GenomicEstimatedBreedingValueSelection
        • GenotypeBuilderSelection
        • IntegerMateSelectionProtocol
        • IntegerSelectionProtocol
        • L1NormGenomicSelection
        • L2NormGenomicSelection
        • MateSelectionProtocol
        • MeanExpectedHeterozygositySelection
        • MeanGenomicRelationshipSelection
        • MultiObjectiveGenomicSelection
        • OptimalContributionSelection
        • OptimalHaploidValueSelection
        • OptimalPopulationValueSelection
        • PopulationAlleleFrequencyDistanceSelection
        • PopulationAlleleUnavailabilitySelection
        • RandomSelection
        • RealMateSelectionProtocol
        • RealSelectionProtocol
        • SelectionProtocol
        • SubsetMateSelectionProtocol
        • SubsetSelectionProtocol
        • UnconstrainedGeneralized1NormGenomicSelection
        • UnconstrainedMultiObjectiveGenomicMating
        • UnconstrainedSelectionProtocol
        • UsefulnessCriterionSelection
        • WeightedGenomicSelection
        • cfg
        • prob
        • soln
        • targetfn
        • transfn
        • weightfn
  • core
    • error
      • error_attr_python
        • check_is_callable
        • check_is_iterable
        • error_readonly
      • error_generic_numpy
        • generic_check_ndarray_eq
        • generic_check_ndarray_is_square
        • generic_check_ndarray_ndim
        • generic_check_ndarray_ndim_gteq
        • generic_check_ndarray_shape
        • generic_check_ndarray_size
        • generic_check_ndarray_sum
      • error_generic_python
        • generic_check_isinstance
      • error_io_python
        • check_directory_exists
        • check_file_exists
        • check_path_exists
      • error_type_h5py
        • check_is_h5py_File
      • error_type_numpy
        • check_is_Generator
        • check_is_Generator_or_RandomState
        • check_is_Integral_or_ndarray
        • check_is_Number_or_ndarray
        • check_is_RandomState
        • check_is_Real_or_ndarray
        • check_is_ndarray
        • check_is_str_or_ndarray
        • check_ndarray_dtype
        • check_ndarray_dtype_is_bool
        • check_ndarray_dtype_is_bool_or_integer
        • check_ndarray_dtype_is_bool_or_number
        • check_ndarray_dtype_is_float16
        • check_ndarray_dtype_is_float32
        • check_ndarray_dtype_is_float64
        • check_ndarray_dtype_is_floating
        • check_ndarray_dtype_is_int16
        • check_ndarray_dtype_is_int32
        • check_ndarray_dtype_is_int64
        • check_ndarray_dtype_is_int8
        • check_ndarray_dtype_is_integer
        • check_ndarray_dtype_is_integer_or_floating
        • check_ndarray_dtype_is_number
        • check_ndarray_dtype_is_object
        • check_ndarray_dtype_is_object_or_string
        • check_ndarray_dtype_is_real
        • check_ndarray_dtype_is_string
        • check_ndarray_dtype_is_unicode
      • error_type_pandas
        • check_Series_all_type
        • check_is_pandas_DataFrame
      • error_type_python
        • check_Sequence_all_type
        • check_inherits
        • check_is_Callable
        • check_is_Complex
        • check_is_Container
        • check_is_Integral
        • check_is_Integral_or_None
        • check_is_Integral_or_inf
        • check_is_Number
        • check_is_Real
        • check_is_Sequence
        • check_is_array_like
        • check_is_bool
        • check_is_bytes
        • check_is_class
        • check_is_dict
        • check_is_float
        • check_is_frozenset
        • check_is_int
        • check_is_int_or_None
        • check_is_int_or_inf
        • check_is_list
        • check_is_list_or_tuple
        • check_is_range
        • check_is_set
        • check_is_str
        • check_is_str_or_Integral
        • check_is_str_or_Sequence
        • check_is_str_or_iterable
        • check_is_tuple
        • check_is_type
        • check_isinstance
      • error_value_h5py
        • check_h5py_File_has_group
        • check_h5py_File_has_groups
        • check_h5py_File_is_readable
        • check_h5py_File_is_writable
      • error_value_numpy
        • check_ndarray_all_gt
        • check_ndarray_all_gteq
        • check_ndarray_axis_len
        • check_ndarray_axis_len_eq
        • check_ndarray_axis_len_gt
        • check_ndarray_axis_len_gteq
        • check_ndarray_axis_len_lt
        • check_ndarray_axis_len_lteq
        • check_ndarray_eq
        • check_ndarray_has_value
        • check_ndarray_has_values
        • check_ndarray_in_interval
        • check_ndarray_is_binary
        • check_ndarray_is_hypercube
        • check_ndarray_is_square
        • check_ndarray_is_triu
        • check_ndarray_len_eq
        • check_ndarray_len_gteq
        • check_ndarray_len_is_multiple_of
        • check_ndarray_mean_is_approx
        • check_ndarray_ndim
        • check_ndarray_ndim_gteq
        • check_ndarray_shape_eq
        • check_ndarray_size
        • check_ndarray_std_is_approx
        • check_ndarray_sum
      • error_value_pandas
        • check_pandas_DataFrame_has_column
        • check_pandas_DataFrame_has_column_index
        • check_pandas_DataFrame_has_column_indices
        • check_pandas_DataFrame_has_columns
        • check_pandas_Series_has_index
        • check_pandas_Series_has_indices
        • check_pandas_Series_has_value
        • check_pandas_Series_has_values
      • error_value_python
        • check_Sequence_has_index
        • check_Sequence_has_indices
        • check_Sequence_has_value
        • check_Sequence_has_values
        • check_all_equal
        • check_dict_has_keys
        • check_dict_keys_all_type
        • check_dict_values_all_type
        • check_dict_values_have_equal_len
        • check_dict_values_len_eq
        • check_is_eq
        • check_is_gt
        • check_is_gteq
        • check_is_in_interval_exclusive
        • check_is_in_interval_inclusive
        • check_is_lt
        • check_is_lteq
        • check_is_neq
        • check_is_not_None
        • check_len
        • check_len_eq
        • check_str_value
        • check_tuple_len_eq
    • io
      • CSVDictInputOutput
        • CSVDictInputOutput
        • check_is_CSVDictInputOutput
      • CSVInputOutput
        • CSVInputOutput
        • check_is_CSVInputOutput
      • Copyable
        • Copyable
        • check_is_Copyable
      • DictInputOutput
        • DictInputOutput
        • check_is_DictInputOutput
      • HDF5InputOutput
        • HDF5InputOutput
        • check_is_HDF5InputOutput
      • NPYInputOutput
        • NPYInputOutput
        • check_is_NPYInputOutput
      • NPZInputOutput
        • NPZInputOutput
        • check_is_NPZInputOutput
      • NumPyInputOutput
        • NumPyInputOutput
        • check_is_NumPyInputOutput
      • PandasDictInputOutput
        • PandasDictInputOutput
        • check_is_PandasDictInputOutput
      • PandasInputOutput
        • PandasInputOutput
        • check_is_PandasInputOutput
    • mat
      • DenseMatrix
        • DenseMatrix
        • check_is_DenseMatrix
      • DenseMutableMatrix
        • DenseMutableMatrix
        • check_is_DenseMutableMatrix
      • DensePhasedMatrix
        • DensePhasedMatrix
        • check_is_DensePhasedMatrix
      • DensePhasedTaxaVariantMatrix
        • DensePhasedTaxaVariantMatrix
        • check_is_DensePhasedTaxaVariantMatrix
      • DenseScaledMatrix
        • DenseScaledMatrix
        • check_is_DenseScaledMatrix
      • DenseScaledSquareTaxaTraitMatrix
        • DenseScaledSquareTaxaTraitMatrix
        • check_is_DenseScaledSquareTaxaTraitMatrix
      • DenseSquare2TaxaTraitMatrix
        • DenseSquare2TaxaTraitMatrix
      • DenseSquareMatrix
        • DenseSquareMatrix
        • check_is_DenseSquareMatrix
      • DenseSquareTaxaMatrix
        • DenseSquareTaxaMatrix
        • check_is_DenseSquareTaxaMatrix
      • DenseSquareTaxaSquareTraitMatrix
        • DenseSquareTaxaSquareTraitMatrix
        • check_is_DenseSquareTaxaSquareTraitMatrix
      • DenseSquareTaxaTraitMatrix
        • DenseSquareTaxaTraitMatrix
        • check_is_DenseSquareTaxaTraitMatrix
      • DenseSquareTraitMatrix
        • DenseSquareTraitMatrix
        • check_is_DenseSquareTraitMatrix
      • DenseTaxaMatrix
        • DenseTaxaMatrix
        • check_is_DenseTaxaMatrix
      • DenseTaxaTraitMatrix
        • DenseTaxaTraitMatrix
        • check_is_DenseTaxaTraitMatrix
      • DenseTaxaVariantMatrix
        • DenseTaxaVariantMatrix
        • check_is_DenseTaxaVariantMatrix
      • DenseTraitMatrix
        • DenseTraitMatrix
        • check_is_DenseTraitMatrix
      • DenseVariantMatrix
        • DenseVariantMatrix
        • check_is_DenseVariantMatrix
      • GroupableMatrix
        • GroupableMatrix
        • check_is_GroupableMatrix
      • Matrix
        • Matrix
        • check_is_Matrix
      • MutableMatrix
        • MutableMatrix
        • check_is_MutableMatrix
      • PhasedMatrix
        • PhasedMatrix
        • check_is_PhasedMatrix
      • PhasedTaxaVariantMatrix
        • PhasedTaxaVariantMatrix
        • check_is_PhasedTaxaVariantMatrix
      • PrunableMatrix
        • PrunableMatrix
        • check_is_PrunableMatrix
      • ScaledMatrix
        • ScaledMatrix
        • check_is_ScaledMatrix
      • ScaledSquareTaxaTraitMatrix
        • ScaledSquareTaxaTraitMatrix
        • check_is_ScaledSquareTaxaTraitMatrix
      • SortableMatrix
        • SortableMatrix
        • check_is_SortableMatrix
      • SquareMatrix
        • SquareMatrix
        • check_is_SquareMatrix
      • SquareTaxaMatrix
        • SquareTaxaMatrix
        • check_is_SquareTaxaMatrix
      • SquareTaxaSquareTraitMatrix
        • SquareTaxaSquareTraitMatrix
        • check_is_SquareTaxaSquareTraitMatrix
      • SquareTaxaTraitMatrix
        • SquareTaxaTraitMatrix
        • check_is_SquareTaxaTraitMatrix
      • SquareTraitMatrix
        • SquareTraitMatrix
        • check_is_SquareTraitMatrix
      • TaxaMatrix
        • TaxaMatrix
        • check_is_TaxaMatrix
      • TaxaTraitMatrix
        • TaxaTraitMatrix
        • check_is_TaxaTraitMatrix
      • TaxaVariantMatrix
        • TaxaVariantMatrix
        • check_is_TaxaVariantMatrix
      • TraitMatrix
        • TraitMatrix
        • check_is_TraitMatrix
      • VariantMatrix
        • VariantMatrix
        • check_is_VariantMatrix
    • random
      • prng
        • seed
        • spawn
      • sampling
        • axis_shuffle
        • outcross_shuffle
        • stochastic_universal_sampling
        • tiled_choice
    • util
      • array
        • flattenix
        • get_axis
        • sliceaxisix
        • sqarrayix
        • triudix
        • triuix
        • xmapix
      • h5py
        • h5py_File_has_group
        • h5py_File_is_readable
        • h5py_File_is_writable
        • h5py_File_read_dict
        • h5py_File_read_int
        • h5py_File_read_ndarray
        • h5py_File_read_ndarray_int
        • h5py_File_read_ndarray_int8
        • h5py_File_read_ndarray_utf8
        • h5py_File_read_utf8
        • h5py_File_write_dict
      • haplo
        • haplobin
        • haplobin_bounds
        • haplomat
        • nhaploblk_chrom
      • iterator
        • iterlen
      • mate
        • dense_cross
        • dense_dh
        • dense_meiosis
      • pareto
        • is_pareto_efficient
      • subroutines
        • human2bytes
        • matrix_is_sorted
        • slice_to_list
        • slice_to_range
        • srange
      • trans
        • trans_ndpt_pseudo_dist
  • model
    • embvmat
      • DenseExpectedMaximumBreedingValueMatrix
        • DenseExpectedMaximumBreedingValueMatrix
        • check_is_DenseExpectedMaximumBreedingValueMatrix
      • ExpectedMaximumBreedingValueMatrix
        • ExpectedMaximumBreedingValueMatrix
        • check_is_ExpectedMaximumBreedingValueMatrix
    • gmod
      • AdditiveDominanceEpistaticLinearGenomicModel
        • AdditiveDominanceEpistaticLinearGenomicModel
        • check_is_AdditiveDominanceEpistaticLinearGenomicModel
      • AdditiveDominanceLinearGenomicModel
        • AdditiveDominanceLinearGenomicModel
        • check_is_AdditiveDominanceLinearGenomicModel
      • AdditiveLinearGenomicModel
        • AdditiveLinearGenomicModel
        • check_is_AdditiveLinearGenomicModel
      • CoancestryLinearGenomicModel
        • CoancestryLinearGenomicModel
        • check_is_CoancestryLinearGenomicModel
      • DenseAdditiveDominanceLinearGenomicModel
        • DenseAdditiveDominanceLinearGenomicModel
        • check_is_DenseAdditiveDominanceLinearGenomicModel
      • DenseAdditiveLinearGenomicModel
        • DenseAdditiveLinearGenomicModel
        • check_is_DenseAdditiveLinearGenomicModel
      • DenseLinearGenomicModel
        • DenseLinearGenomicModel
        • check_is_DenseLinearGenomicModel
      • GenomicModel
        • GenomicModel
        • check_is_GenomicModel
      • LinearGenomicModel
        • LinearGenomicModel
        • check_is_LinearGenomicModel
      • NonlinearGenomicModel
        • NonlinearGenomicModel
        • check_is_NonlinearGenomicModel
      • rrBLUPModel0
        • rrBLUPModel0
        • check_is_rrBLUPModel0
        • gauss_seidel
        • rrBLUP_ML0
        • rrBLUP_ML0_calc_G
        • rrBLUP_ML0_calc_ZtZplI
        • rrBLUP_ML0_calc_Zty
        • rrBLUP_ML0_calc_d_V
        • rrBLUP_ML0_calc_etasq
        • rrBLUP_ML0_calc_ridge
        • rrBLUP_ML0_center_y
        • rrBLUP_ML0_neg2LogLik_fast
        • rrBLUP_ML0_nonzero_d_V
    • pcvmat
      • AdditiveProgenyGeneticCovarianceMatrix
        • AdditiveProgenyGeneticCovarianceMatrix
        • check_is_AdditiveProgenyGeneticCovarianceMatrix
      • AdditiveProgenyGenicCovarianceMatrix
        • AdditiveProgenyGenicCovarianceMatrix
        • check_is_AdditiveProgenyGenicCovarianceMatrix
      • DenseAdditiveProgenyGeneticCovarianceMatrix
        • DenseAdditiveProgenyGeneticCovarianceMatrix
        • check_is_DenseAdditiveProgenyGeneticCovarianceMatrix
      • DenseAdditiveProgenyGenicCovarianceMatrix
        • DenseAdditiveProgenyGenicCovarianceMatrix
        • check_is_DenseAdditiveProgenyGenicCovarianceMatrix
      • DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix
        • DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix
        • check_is_DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix
      • DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix
        • DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix
      • DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix
        • DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix
        • check_is_DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix
      • DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix
        • DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix
      • DenseProgenyGeneticCovarianceMatrix
        • DenseProgenyGeneticCovarianceMatrix
        • check_is_DenseProgenyGeneticCovarianceMatrix
      • DenseProgenyGenicCovarianceMatrix
        • DenseProgenyGenicCovarianceMatrix
        • check_is_DenseProgenyGenicCovarianceMatrix
      • DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix
        • DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix
      • DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix
        • DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix
      • DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix
        • DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix
      • DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix
        • DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix
      • ProgenyGeneticCovarianceMatrix
        • ProgenyGeneticCovarianceMatrix
        • check_is_ProgenyGeneticCovarianceMatrix
      • ProgenyGenicCovarianceMatrix
        • ProgenyGenicCovarianceMatrix
        • check_is_ProgenyGenicCovarianceMatrix
    • vmat
      • AdditiveGeneticVarianceMatrix
        • AdditiveGeneticVarianceMatrix
        • check_is_AdditiveGeneticVarianceMatrix
      • AdditiveGenicVarianceMatrix
        • AdditiveGenicVarianceMatrix
        • check_is_AdditiveGenicVarianceMatrix
      • DenseAdditiveGeneticVarianceMatrix
        • DenseAdditiveGeneticVarianceMatrix
        • check_is_DenseAdditiveGeneticVarianceMatrix
      • DenseAdditiveGenicVarianceMatrix
        • DenseAdditiveGenicVarianceMatrix
        • check_is_DenseAdditiveGenicVarianceMatrix
      • DenseDihybridDHAdditiveGeneticVarianceMatrix
        • DenseDihybridDHAdditiveGeneticVarianceMatrix
        • check_is_DenseDihybridDHAdditiveGeneticVarianceMatrix
      • DenseDihybridDHAdditiveGenicVarianceMatrix
        • DenseDihybridDHAdditiveGenicVarianceMatrix
      • DenseFourWayDHAdditiveGeneticVarianceMatrix
        • DenseFourWayDHAdditiveGeneticVarianceMatrix
        • check_is_DenseFourWayDHAdditiveGeneticVarianceMatrix
      • DenseFourWayDHAdditiveGenicVarianceMatrix
        • DenseFourWayDHAdditiveGenicVarianceMatrix
      • DenseGeneticVarianceMatrix
        • DenseGeneticVarianceMatrix
        • check_is_DenseGeneticVarianceMatrix
      • DenseGenicVarianceMatrix
        • DenseGenicVarianceMatrix
        • check_is_DenseGenicVarianceMatrix
      • DenseThreeWayDHAdditiveGeneticVarianceMatrix
        • DenseThreeWayDHAdditiveGeneticVarianceMatrix
      • DenseThreeWayDHAdditiveGenicVarianceMatrix
        • DenseThreeWayDHAdditiveGenicVarianceMatrix
      • DenseTwoWayDHAdditiveGeneticVarianceMatrix
        • DenseTwoWayDHAdditiveGeneticVarianceMatrix
      • DenseTwoWayDHAdditiveGenicVarianceMatrix
        • DenseTwoWayDHAdditiveGenicVarianceMatrix
      • GeneticVarianceMatrix
        • GeneticVarianceMatrix
        • check_is_GeneticVarianceMatrix
      • GenicVarianceMatrix
        • GenicVarianceMatrix
        • check_is_GenicVarianceMatrix
      • fcty
        • AdditiveGeneticVarianceMatrixFactory
        • AdditiveGenicVarianceMatrixFactory
        • DenseDihybridDHAdditiveGeneticVarianceMatrixFactory
        • DenseFourWayDHAdditiveGeneticVarianceMatrixFactory
        • DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory
        • DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory
        • DenseTwoWayDHAdditiveGenicVarianceMatrixFactory
        • GeneticVarianceMatrixFactory
        • GenicVarianceMatrixFactory
      • util
        • cov_D1s
        • cov_D1st
        • cov_D2s
        • cov_D2st
        • rprob_filial
    • wgebvmat
      • DenseWeightedGenomicEstimatedBreedingValueMatrix
        • DenseWeightedGenomicEstimatedBreedingValueMatrix
        • check_is_DenseWeightedGenomicEstimatedBreedingValueMatrix
      • WeightedGenomicEstimatedBreedingValueMatrix
        • WeightedGenomicEstimatedBreedingValueMatrix
        • check_is_WeightedGenomicEstimatedBreedingValueMatrix
  • opt
    • algo
      • BinaryGeneticAlgorithm
        • BinaryGeneticAlgorithm
      • BinaryOptimizationAlgorithm
        • BinaryOptimizationAlgorithm
        • check_is_BinaryOptimizationAlgorithm
      • IntegerGeneticAlgorithm
        • IntegerGeneticAlgorithm
      • IntegerOptimizationAlgorithm
        • IntegerOptimizationAlgorithm
        • check_is_IntegerOptimizationAlgorithm
      • NSGA2BinaryGeneticAlgorithm
        • NSGA2BinaryGeneticAlgorithm
      • NSGA2IntegerGeneticAlgorithm
        • NSGA2IntegerGeneticAlgorithm
      • NSGA2MemeticSubsetGeneticAlgorithm
        • NSGA2MutatorASubsetGeneticAlgorithm
        • NSGA2MutatorBSubsetGeneticAlgorithm
        • NSGA2SteepestDescentSubsetGeneticAlgorithm
        • NSGA2StochasticDescentSubsetGeneticAlgorithm
      • NSGA2RealGeneticAlgorithm
        • NSGA2RealGeneticAlgorithm
      • NSGA2SubsetGeneticAlgorithm
        • NSGA2SubsetGeneticAlgorithm
      • NSGA3SubsetGeneticAlgorithm
        • NSGA3SubsetGeneticAlgorithm
      • OptimizationAlgorithm
        • OptimizationAlgorithm
        • check_is_OptimizationAlgorithm
      • RealGeneticAlgorithm
        • RealGeneticAlgorithm
      • RealOptimizationAlgorithm
        • RealOptimizationAlgorithm
        • check_is_RealOptimizationAlgorithm
      • SortingSteepestDescentSubsetHillClimber
        • SortingSteepestDescentSubsetHillClimber
      • SortingSubsetOptimizationAlgorithm
        • SortingSubsetOptimizationAlgorithm
      • SteepestDescentSubsetHillClimber
        • SteepestDescentSubsetHillClimber
      • SubsetGeneticAlgorithm
        • SubsetGeneticAlgorithm
      • SubsetOptimizationAlgorithm
        • SubsetOptimizationAlgorithm
        • check_is_SubsetOptimizationAlgorithm
      • UnconstrainedNSGA2SetGeneticAlgorithm
        • UnconstrainedNSGA2SetGeneticAlgorithm
      • UnconstrainedOptimizationAlgorithm
        • UnconstrainedOptimizationAlgorithm
        • check_is_OptimizationAlgorithm
      • UnconstrainedSetGeneticAlgorithm
        • UnconstrainedSetGeneticAlgorithm
      • UnconstrainedSteepestAscentSetHillClimber
        • UnconstrainedSteepestAscentSetHillClimber
      • pymoo_addon
        • IntegerPolynomialMutation
        • IntegerSimulatedBinaryCrossover
        • MultiObjectiveSteepestDescentHillClimberMutation
        • MultiObjectiveStochasticDescentHillClimberMutation
        • MultiObjectiveStochasticHillClimberMutation
        • MutatorA
        • MutatorB
        • MutatorF
        • ReducedExchangeCrossover
        • ReducedExchangeMutation
        • StochasticHillClimberMutation
        • SubsetRandomSampling
        • dominates
        • tiled_choice
    • prob
      • BinaryProblem
        • BinaryProblem
        • check_BinaryProblem_is_multi_objective
        • check_BinaryProblem_is_single_objective
        • check_is_BinaryProblem
      • FunctionWeight
        • FunctionWeight
        • MaximizingFunctionWeight
        • MinimizingFunctionWeight
      • IntegerProblem
        • IntegerProblem
        • check_IntegerProblem_is_multi_objective
        • check_IntegerProblem_is_single_objective
        • check_is_IntegerProblem
      • Problem
        • Problem
        • check_is_Problem
      • RealProblem
        • RealProblem
        • check_RealProblem_is_multi_objective
        • check_RealProblem_is_single_objective
        • check_is_RealProblem
      • SubsetProblem
        • SubsetProblem
        • check_SubsetProblem_is_multi_objective
        • check_SubsetProblem_is_single_objective
        • check_is_SubsetProblem
    • soln
      • BinarySolution
        • BinarySolution
        • check_is_BinarySolution
      • IntegerSolution
        • IntegerSolution
        • check_is_IntegerSolution
      • RealSolution
        • RealSolution
        • check_is_RealSolution
      • Solution
        • Solution
        • check_is_Solution
      • SubsetSolution
        • SubsetSolution
        • check_is_SubsetSolution
  • popgen
    • bvmat
      • BreedingValueMatrix
        • BreedingValueMatrix
        • check_is_BreedingValueMatrix
      • DenseBreedingValueMatrix
        • DenseBreedingValueMatrix
        • check_is_DenseBreedingValueMatrix
      • DenseEstimatedBreedingValueMatrix
        • DenseEstimatedBreedingValueMatrix
        • check_is_DenseEstimatedBreedingValueMatrix
      • DenseGenomicEstimatedBreedingValueMatrix
        • DenseGenomicEstimatedBreedingValueMatrix
        • check_is_DenseGenomicEstimatedBreedingValueMatrix
    • cmat
      • CoancestryMatrix
        • CoancestryMatrix
        • check_is_CoancestryMatrix
      • DenseCoancestryMatrix
        • DenseCoancestryMatrix
        • check_is_DenseCoancestryMatrix
      • DenseGeneralizedWeightedCoancestryMatrix
        • DenseGeneralizedWeightedCoancestryMatrix
        • check_is_DenseGeneralizedWeightedCoancestryMatrix
      • DenseMolecularCoancestryMatrix
        • DenseMolecularCoancestryMatrix
        • check_is_DenseMolecularCoancestryMatrix
      • DenseVanRadenCoancestryMatrix
        • DenseVanRadenCoancestryMatrix
        • check_is_DenseVanRadenCoancestryMatrix
      • DenseYangCoancestryMatrix
        • DenseYangCoancestryMatrix
        • check_is_DenseYangCoancestryMatrix
      • fcty
        • CoancestryMatrixFactory
        • DenseCoancestryMatrixFactory
        • DenseGeneralizedWeightedCoancestryMatrixFactory
        • DenseMolecularCoancestryMatrixFactory
        • DenseVanRadenCoancestryMatrixFactory
        • DenseYangCoancestryMatrixFactory
    • gmap
      • DenseGeneticMappableMatrix
        • DenseGeneticMappableMatrix
        • check_is_DenseGeneticMappableMatrix
      • ExtendedGeneticMap
        • ExtendedGeneticMap
        • check_is_ExtendedGeneticMap
      • GeneticMap
        • GeneticMap
        • check_is_GeneticMap
      • GeneticMapFunction
        • GeneticMapFunction
        • check_is_GeneticMapFunction
      • GeneticMappableMatrix
        • GeneticMappableMatrix
        • check_is_GeneticMappableMatrix
      • HaldaneMapFunction
        • HaldaneMapFunction
        • check_is_HaldaneMapFunction
      • KosambiMapFunction
        • KosambiMapFunction
        • check_is_KosambiMapFunction
      • StandardGeneticMap
        • StandardGeneticMap
        • check_is_StandardGeneticMap
      • util
        • cM2d
    • gmat
      • DenseGenotypeMatrix
        • DenseGenotypeMatrix
        • check_is_DenseGenotypeMatrix
      • DensePhasedGenotypeMatrix
        • DensePhasedGenotypeMatrix
        • check_DensePhasedGenotypeMatrix_has_vrnt_xoprob
        • check_is_DensePhasedGenotypeMatrix
      • GenotypeMatrix
        • GenotypeMatrix
        • check_GenotypeMatrix_has_taxa
        • check_is_GenotypeMatrix
      • HaplotypeMatrix
        • HaplotypeMatrix
        • check_is_HaplotypeMatrix
      • PhasedGenotypeMatrix
        • PhasedGenotypeMatrix
        • check_PhasedGenotypeMatrix_has_vrnt_mask
        • check_PhasedGenotypeMatrix_has_vrnt_xoprob
        • check_is_PhasedGenotypeMatrix
      • PhasedHaplotypeMatrix
        • PhasedHaplotypeMatrix
        • check_is_PhasedHaplotypeMatrix
  • test
    • assert_python
      • assert_class_documentation
      • assert_class_isabstract
      • assert_class_isconcrete
      • assert_class_ismixin
      • assert_class_issemiabstract
      • assert_classmethod_documentation
      • assert_classmethod_isabstract
      • assert_classmethod_isconcrete
      • assert_classmethod_not_raises_NotImplementedError
      • assert_classmethod_raises_NotImplementedError
      • assert_docstring
      • assert_function_documentation
      • assert_function_isabstract
      • assert_function_isconcrete
      • assert_function_not_raises_NotImplementedError
      • assert_function_raises_NotImplementedError
      • assert_hasattr
      • assert_method_documentation
      • assert_method_isabstract
      • assert_method_isconcrete
      • assert_method_not_raises_NotImplementedError
      • assert_method_raises_NotImplementedError
      • assert_module_documentation
      • assert_module_public_api
      • assert_property_documentation
      • assert_property_isabstract
      • assert_property_isconcrete
      • assert_property_not_raises_NotImplementedError
      • assert_property_raises_NotImplementedError
      • not_raises
      • raises
  • pybrops
  • soln
  • SubsetSelect...

SubsetSelectionSolution#

Classes

SubsetSelectionSolution

Class representing subset selection solutions.

Functions

check_is_SubsetSelectionSolution

Check if object is of type SubsetSelectionSolution, otherwise raise TypeError.

previous

check_is_SubsetMateSelectionSolution

next

SubsetSelectionSolution

© Copyright 2024, Robert Z. Shrote.

Created using Sphinx 7.2.6.

Built with the PyData Sphinx Theme 0.15.2.