DenseGeneralizedWeightedCoancestryMatrixFactory#

class pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory.DenseGeneralizedWeightedCoancestryMatrixFactory(**kwargs)[source]#

Factory class for producing CoancestryMatrix objects.

Constructor for DenseGeneralizedWeightedCoancestryMatrixFactory.

Parameters:: kwargs (dict) – Additional keyword arguments used for cooperative inheritance.

Methods

Create a CoancestryMatrix from a GenotypeMatrix.

from_gmat(gmat, mkrwt=None, afreq=None, **kwargs)[source]#

Create a CoancestryMatrix from a GenotypeMatrix.

Parameters:

gmat (GenotypeMatrix) – Input genotype matrix from which to calculate coancestry.
kwargs (dict) – Additional keyword arguments.

Returns:

out – A dense coancestry matrix.

Return type:

DenseGeneralizedWeightedCoancestryMatrix