DenseVanRadenCoancestryMatrixFactory

class pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory.DenseVanRadenCoancestryMatrixFactory(**kwargs)

Bases: CoancestryMatrixFactory

Factory class for producing CoancestryMatrix objects.

Constructor for DenseVanRadenCoancestryMatrixFactory.

Parameters:

kwargs (dict) – Additional keyword arguments used for cooperative inheritance.

Methods

from_gmat

Create a CoancestryMatrix from a GenotypeMatrix.

from_gmat(gmat, p_anc=None, **kwargs)

Create a CoancestryMatrix from a GenotypeMatrix.

Parameters:

• gmat (GenotypeMatrix) – Input genotype matrix from which to calculate coancestry.

• kwargs (dict) – Additional keyword arguments.

Returns:

out – A dense coancestry matrix.

Return type:

DenseVanRadenCoancestryMatrix