All modules for which code is available

• pybrops.breed.arch.BreedingEdge
• pybrops.breed.arch.BreedingGraph
• pybrops.breed.arch.BreedingNode
• pybrops.breed.arch.BreedingProgram
• pybrops.breed.arch.EmigrationOperator
• pybrops.breed.arch.GermplasmBank
• pybrops.breed.arch.ImmigrationOperator
• pybrops.breed.arch.RecurrentSelectionBreedingProgram
• pybrops.breed.op.eval.EvaluationOperator
• pybrops.breed.op.init.InitializationOperator
• pybrops.breed.op.log.Logbook
• pybrops.breed.op.mate.MatingOperator
• pybrops.breed.op.psel.ParentSelectionOperator
• pybrops.breed.op.ssel.SurvivorSelectionOperator
• pybrops.breed.prot.bv.BreedingValueProtocol
• pybrops.breed.prot.bv.MeanPhenotypicBreedingValue
• pybrops.breed.prot.bv.TrueBreedingValue
• pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping
• pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping
• pybrops.breed.prot.gt.DenseUnphasedGenotyping
• pybrops.breed.prot.gt.GenotypingProtocol
• pybrops.breed.prot.mate.FourWayCross
• pybrops.breed.prot.mate.FourWayDHCross
• pybrops.breed.prot.mate.MatingProtocol
• pybrops.breed.prot.mate.SelfCross
• pybrops.breed.prot.mate.ThreeWayCross
• pybrops.breed.prot.mate.ThreeWayDHCross
• pybrops.breed.prot.mate.TwoWayCross
• pybrops.breed.prot.mate.TwoWayDHCross
• pybrops.breed.prot.mate.util
• pybrops.breed.prot.pt.G_E_Phenotyping
• pybrops.breed.prot.pt.PhenotypingProtocol
• pybrops.breed.prot.pt.TruePhenotyping
• pybrops.breed.prot.sel.BinaryMateSelectionProtocol
• pybrops.breed.prot.sel.BinarySelectionProtocol
• pybrops.breed.prot.sel.EstimatedBreedingValueSelection
• pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection
• pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection
• pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection
• pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection
• pybrops.breed.prot.sel.GenotypeBuilderSelection
• pybrops.breed.prot.sel.IntegerMateSelectionProtocol
• pybrops.breed.prot.sel.IntegerSelectionProtocol
• pybrops.breed.prot.sel.L2NormGenomicSelection
• pybrops.breed.prot.sel.MateSelectionProtocol
• pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection
• pybrops.breed.prot.sel.MeanGenomicRelationshipSelection
• pybrops.breed.prot.sel.MultiObjectiveGenomicSelection
• pybrops.breed.prot.sel.OptimalContributionSelection
• pybrops.breed.prot.sel.OptimalHaploidValueSelection
• pybrops.breed.prot.sel.OptimalPopulationValueSelection
• pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection
• pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection
• pybrops.breed.prot.sel.RandomSelection
• pybrops.breed.prot.sel.RealMateSelectionProtocol
• pybrops.breed.prot.sel.RealSelectionProtocol
• pybrops.breed.prot.sel.SelectionProtocol
• pybrops.breed.prot.sel.SubsetMateSelectionProtocol
• pybrops.breed.prot.sel.SubsetSelectionProtocol
• pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection
• pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating
• pybrops.breed.prot.sel.UnconstrainedSelectionProtocol
• pybrops.breed.prot.sel.UsefulnessCriterionSelection
• pybrops.breed.prot.sel.WeightedGenomicSelection
• pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration
• pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration
• pybrops.breed.prot.sel.cfg.MateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.RealSelectionConfiguration
• pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin
• pybrops.breed.prot.sel.cfg.SelectionConfiguration
• pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration
• pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration
• pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration
• pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem
• pybrops.breed.prot.sel.prob.BinarySelectionProblem
• pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem
• pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem
• pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem
• pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem
• pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem
• pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem
• pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem
• pybrops.breed.prot.sel.prob.IntegerSelectionProblem
• pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem
• pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem
• pybrops.breed.prot.sel.prob.MateSelectionProblem
• pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem
• pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem
• pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem
• pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem
• pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem
• pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem
• pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem
• pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem
• pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem
• pybrops.breed.prot.sel.prob.RandomSelectionProblem
• pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem
• pybrops.breed.prot.sel.prob.RealMateSelectionProblem
• pybrops.breed.prot.sel.prob.RealSelectionProblem
• pybrops.breed.prot.sel.prob.SelectionProblem
• pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem
• pybrops.breed.prot.sel.prob.SubsetSelectionProblem
• pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem
• pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem
• pybrops.breed.prot.sel.prob.trans
• pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution
• pybrops.breed.prot.sel.soln.BinarySelectionSolution
• pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution
• pybrops.breed.prot.sel.soln.IntegerSelectionSolution
• pybrops.breed.prot.sel.soln.MateSelectionSolution
• pybrops.breed.prot.sel.soln.RealMateSelectionSolution
• pybrops.breed.prot.sel.soln.RealSelectionSolution
• pybrops.breed.prot.sel.soln.SelectionSolution
• pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution
• pybrops.breed.prot.sel.soln.SubsetSelectionSolution
• pybrops.breed.prot.sel.targetfn
• pybrops.breed.prot.sel.transfn
• pybrops.breed.prot.sel.weightfn
• pybrops.core.error.error_attr_python
• pybrops.core.error.error_generic_numpy
• pybrops.core.error.error_generic_python
• pybrops.core.error.error_io_python
• pybrops.core.error.error_type_h5py
• pybrops.core.error.error_type_numpy
• pybrops.core.error.error_type_pandas
• pybrops.core.error.error_type_python
• pybrops.core.error.error_value_h5py
• pybrops.core.error.error_value_numpy
• pybrops.core.error.error_value_pandas
• pybrops.core.error.error_value_python
• pybrops.core.io.CSVDictInputOutput
• pybrops.core.io.CSVInputOutput
• pybrops.core.io.Copyable
• pybrops.core.io.DictInputOutput
• pybrops.core.io.HDF5InputOutput
• pybrops.core.io.NPYInputOutput
• pybrops.core.io.NPZInputOutput
• pybrops.core.io.NumPyInputOutput
• pybrops.core.io.PandasDictInputOutput
• pybrops.core.io.PandasInputOutput
• pybrops.core.mat.DenseMatrix
• pybrops.core.mat.DenseMutableMatrix
• pybrops.core.mat.DensePhasedMatrix
• pybrops.core.mat.DensePhasedTaxaVariantMatrix
• pybrops.core.mat.DenseScaledMatrix
• pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix
• pybrops.core.mat.DenseSquare2TaxaTraitMatrix
• pybrops.core.mat.DenseSquareMatrix
• pybrops.core.mat.DenseSquareTaxaMatrix
• pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix
• pybrops.core.mat.DenseSquareTaxaTraitMatrix
• pybrops.core.mat.DenseSquareTraitMatrix
• pybrops.core.mat.DenseTaxaMatrix
• pybrops.core.mat.DenseTaxaTraitMatrix
• pybrops.core.mat.DenseTaxaVariantMatrix
• pybrops.core.mat.DenseTraitMatrix
• pybrops.core.mat.DenseVariantMatrix
• pybrops.core.mat.GroupableMatrix
• pybrops.core.mat.Matrix
• pybrops.core.mat.MutableMatrix
• pybrops.core.mat.PhasedMatrix
• pybrops.core.mat.PhasedTaxaVariantMatrix
• pybrops.core.mat.PrunableMatrix
• pybrops.core.mat.ScaledMatrix
• pybrops.core.mat.ScaledSquareTaxaTraitMatrix
• pybrops.core.mat.SortableMatrix
• pybrops.core.mat.SquareMatrix
• pybrops.core.mat.SquareTaxaMatrix
• pybrops.core.mat.SquareTaxaSquareTraitMatrix
• pybrops.core.mat.SquareTaxaTraitMatrix
• pybrops.core.mat.SquareTraitMatrix
• pybrops.core.mat.TaxaMatrix
• pybrops.core.mat.TaxaTraitMatrix
• pybrops.core.mat.TaxaVariantMatrix
• pybrops.core.mat.TraitMatrix
• pybrops.core.mat.VariantMatrix
• pybrops.core.random.prng
• pybrops.core.random.sampling
• pybrops.core.util.array
• pybrops.core.util.h5py
• pybrops.core.util.haplo
• pybrops.core.util.iterator
• pybrops.core.util.mate
• pybrops.core.util.pareto
• pybrops.core.util.subroutines
• pybrops.core.util.trans
• pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix
• pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix
• pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel
• pybrops.model.gmod.AdditiveDominanceLinearGenomicModel
• pybrops.model.gmod.AdditiveLinearGenomicModel
• pybrops.model.gmod.CoancestryLinearGenomicModel
• pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel
• pybrops.model.gmod.DenseAdditiveLinearGenomicModel
• pybrops.model.gmod.DenseLinearGenomicModel
• pybrops.model.gmod.GenomicModel
• pybrops.model.gmod.LinearGenomicModel
• pybrops.model.gmod.NonlinearGenomicModel
• pybrops.model.gmod.rrBLUPModel0
• pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix
• pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix
• pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix
• pybrops.model.vmat.AdditiveGeneticVarianceMatrix
• pybrops.model.vmat.AdditiveGenicVarianceMatrix
• pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix
• pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix
• pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix
• pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix
• pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix
• pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix
• pybrops.model.vmat.DenseGeneticVarianceMatrix
• pybrops.model.vmat.DenseGenicVarianceMatrix
• pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix
• pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix
• pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix
• pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix
• pybrops.model.vmat.GeneticVarianceMatrix
• pybrops.model.vmat.GenicVarianceMatrix
• pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory
• pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory
• pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory
• pybrops.model.vmat.fcty.GenicVarianceMatrixFactory
• pybrops.model.vmat.util
• pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix
• pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix
• pybrops.opt.algo.BinaryGeneticAlgorithm
• pybrops.opt.algo.BinaryOptimizationAlgorithm
• pybrops.opt.algo.IntegerGeneticAlgorithm
• pybrops.opt.algo.IntegerOptimizationAlgorithm
• pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm
• pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm
• pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm
• pybrops.opt.algo.NSGA2RealGeneticAlgorithm
• pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm
• pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm
• pybrops.opt.algo.OptimizationAlgorithm
• pybrops.opt.algo.RealGeneticAlgorithm
• pybrops.opt.algo.RealOptimizationAlgorithm
• pybrops.opt.algo.SortingSteepestDescentSubsetHillClimber
• pybrops.opt.algo.SortingSubsetOptimizationAlgorithm
• pybrops.opt.algo.SteepestDescentSubsetHillClimber
• pybrops.opt.algo.SubsetGeneticAlgorithm
• pybrops.opt.algo.SubsetOptimizationAlgorithm
• pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm
• pybrops.opt.algo.UnconstrainedOptimizationAlgorithm
• pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm
• pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber
• pybrops.opt.algo.pymoo_addon
• pybrops.opt.prob.BinaryProblem
• pybrops.opt.prob.FunctionWeight
• pybrops.opt.prob.IntegerProblem
• pybrops.opt.prob.Problem
• pybrops.opt.prob.RealProblem
• pybrops.opt.prob.SubsetProblem
• pybrops.opt.soln.BinarySolution
• pybrops.opt.soln.IntegerSolution
• pybrops.opt.soln.RealSolution
• pybrops.opt.soln.Solution
• pybrops.opt.soln.SubsetSolution
• pybrops.popgen.bvmat.BreedingValueMatrix
• pybrops.popgen.bvmat.DenseBreedingValueMatrix
• pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix
• pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix
• pybrops.popgen.cmat.CoancestryMatrix
• pybrops.popgen.cmat.DenseCoancestryMatrix
• pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix
• pybrops.popgen.cmat.DenseMolecularCoancestryMatrix
• pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix
• pybrops.popgen.cmat.DenseYangCoancestryMatrix
• pybrops.popgen.cmat.fcty.CoancestryMatrixFactory
• pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory
• pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory
• pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory
• pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory
• pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory
• pybrops.popgen.gmap.DenseGeneticMappableMatrix
• pybrops.popgen.gmap.ExtendedGeneticMap
• pybrops.popgen.gmap.GeneticMap
• pybrops.popgen.gmap.GeneticMapFunction
• pybrops.popgen.gmap.GeneticMappableMatrix
• pybrops.popgen.gmap.HaldaneMapFunction
• pybrops.popgen.gmap.KosambiMapFunction
• pybrops.popgen.gmap.StandardGeneticMap
• pybrops.popgen.gmap.util
• pybrops.popgen.gmat.DenseGenotypeMatrix
• pybrops.popgen.gmat.DensePhasedGenotypeMatrix
• pybrops.popgen.gmat.GenotypeMatrix
• pybrops.popgen.gmat.HaplotypeMatrix
• pybrops.popgen.gmat.PhasedGenotypeMatrix
• pybrops.popgen.gmat.PhasedHaplotypeMatrix
• pybrops.test.assert_python