Index

_

__add__() (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) __call__() (pybrops.opt.algo.pymoo_addon.IntegerPolynomialMutation method) (pybrops.opt.algo.pymoo_addon.IntegerSimulatedBinaryCrossover method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveSteepestDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MutatorA method) (pybrops.opt.algo.pymoo_addon.MutatorB method) (pybrops.opt.algo.pymoo_addon.MutatorF method) (pybrops.opt.algo.pymoo_addon.ReducedExchangeCrossover method) (pybrops.opt.algo.pymoo_addon.ReducedExchangeMutation method) (pybrops.opt.algo.pymoo_addon.StochasticHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.SubsetRandomSampling method)

__mul__() (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

A

acount() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) AdditiveDominanceEpistaticLinearGenomicModel (class in pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel) AdditiveDominanceLinearGenomicModel (class in pybrops.model.gmod.AdditiveDominanceLinearGenomicModel) AdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.AdditiveGeneticVarianceMatrix) AdditiveGeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory) AdditiveGenicVarianceMatrix (class in pybrops.model.vmat.AdditiveGenicVarianceMatrix) AdditiveGenicVarianceMatrixFactory (class in pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory) AdditiveLinearGenomicModel (class in pybrops.model.gmod.AdditiveLinearGenomicModel) AdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix) AdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix) adjoin() (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) adjoin_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) adjoin_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) adjoin_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) adjoin_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) advance() (pybrops.breed.arch.BreedingProgram.BreedingProgram method) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram method) afixed() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) afreq() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) alpha (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property)

apoly() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) append() (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) append_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) append_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) append_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) append_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) apply_jitter() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) assert_class_documentation() (in module pybrops.test.assert_python) assert_class_isabstract() (in module pybrops.test.assert_python) assert_class_isconcrete() (in module pybrops.test.assert_python) assert_class_ismixin() (in module pybrops.test.assert_python) assert_class_issemiabstract() (in module pybrops.test.assert_python) assert_classmethod_documentation() (in module pybrops.test.assert_python) assert_classmethod_isabstract() (in module pybrops.test.assert_python) assert_classmethod_isconcrete() (in module pybrops.test.assert_python) assert_classmethod_not_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_classmethod_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_docstring() (in module pybrops.test.assert_python) assert_function_documentation() (in module pybrops.test.assert_python) assert_function_isabstract() (in module pybrops.test.assert_python) assert_function_isconcrete() (in module pybrops.test.assert_python) assert_function_not_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_function_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_hasattr() (in module pybrops.test.assert_python) assert_method_documentation() (in module pybrops.test.assert_python) assert_method_isabstract() (in module pybrops.test.assert_python) assert_method_isconcrete() (in module pybrops.test.assert_python) assert_method_not_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_method_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_module_documentation() (in module pybrops.test.assert_python) assert_module_public_api() (in module pybrops.test.assert_python) assert_property_documentation() (in module pybrops.test.assert_python) assert_property_isabstract() (in module pybrops.test.assert_python) assert_property_isconcrete() (in module pybrops.test.assert_python) assert_property_not_raises_NotImplementedError() (in module pybrops.test.assert_python) assert_property_raises_NotImplementedError() (in module pybrops.test.assert_python) axis_shuffle() (in module pybrops.core.random.sampling)

B

beta (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) BinaryGeneticAlgorithm (class in pybrops.opt.algo.BinaryGeneticAlgorithm) BinaryMateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration) BinaryMateSelectionProblem (class in pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem) BinaryMateSelectionProtocol (class in pybrops.breed.prot.sel.BinaryMateSelectionProtocol) BinaryMateSelectionSolution (class in pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution) BinaryOptimizationAlgorithm (class in pybrops.opt.algo.BinaryOptimizationAlgorithm) BinaryProblem (class in pybrops.opt.prob.BinaryProblem) BinarySelectionConfiguration (class in pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration) BinarySelectionProblem (class in pybrops.breed.prot.sel.prob.BinarySelectionProblem) BinarySelectionProtocol (class in pybrops.breed.prot.sel.BinarySelectionProtocol) BinarySelectionSolution (class in pybrops.breed.prot.sel.soln.BinarySelectionSolution) BinarySolution (class in pybrops.opt.soln.BinarySolution) BreedingEdge (class in pybrops.breed.arch.BreedingEdge) BreedingGraph (class in pybrops.breed.arch.BreedingGraph) BreedingNode (class in pybrops.breed.arch.BreedingNode) BreedingProgram (class in pybrops.breed.arch.BreedingProgram) BreedingValueMatrix (class in pybrops.popgen.bvmat.BreedingValueMatrix) BreedingValueProtocol (class in pybrops.breed.prot.bv.BreedingValueProtocol) build_spline() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method)

bulmer() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) bulmer_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) bval (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property)

C

C (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) callback (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) check_all_equal() (in module pybrops.core.error.error_value_python) check_BinaryProblem_is_multi_objective() (in module pybrops.opt.prob.BinaryProblem) check_BinaryProblem_is_single_objective() (in module pybrops.opt.prob.BinaryProblem) check_DensePhasedGenotypeMatrix_has_vrnt_xoprob() (in module pybrops.popgen.gmat.DensePhasedGenotypeMatrix) check_dict_has_keys() (in module pybrops.core.error.error_value_python) check_dict_keys_all_type() (in module pybrops.core.error.error_value_python) check_dict_values_all_type() (in module pybrops.core.error.error_value_python) check_dict_values_have_equal_len() (in module pybrops.core.error.error_value_python) check_dict_values_len_eq() (in module pybrops.core.error.error_value_python) check_directory_exists() (in module pybrops.core.error.error_io_python) check_file_exists() (in module pybrops.core.error.error_io_python) check_GenotypeMatrix_has_taxa() (in module pybrops.popgen.gmat.GenotypeMatrix) check_h5py_File_has_group() (in module pybrops.core.error.error_value_h5py) check_h5py_File_has_groups() (in module pybrops.core.error.error_value_h5py) check_h5py_File_is_readable() (in module pybrops.core.error.error_value_h5py) check_h5py_File_is_writable() (in module pybrops.core.error.error_value_h5py) check_inherits() (in module pybrops.core.error.error_type_python) check_IntegerProblem_is_multi_objective() (in module pybrops.opt.prob.IntegerProblem) check_IntegerProblem_is_single_objective() (in module pybrops.opt.prob.IntegerProblem) check_is_AdditiveDominanceEpistaticLinearGenomicModel() (in module pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel) check_is_AdditiveDominanceLinearGenomicModel() (in module pybrops.model.gmod.AdditiveDominanceLinearGenomicModel) check_is_AdditiveGeneticVarianceMatrix() (in module pybrops.model.vmat.AdditiveGeneticVarianceMatrix) check_is_AdditiveGeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory) check_is_AdditiveGenicVarianceMatrix() (in module pybrops.model.vmat.AdditiveGenicVarianceMatrix) check_is_AdditiveGenicVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory) check_is_AdditiveLinearGenomicModel() (in module pybrops.model.gmod.AdditiveLinearGenomicModel) check_is_AdditiveProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix) check_is_AdditiveProgenyGenicCovarianceMatrix() (in module pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix) check_is_array_like() (in module pybrops.core.error.error_type_python) check_is_BinaryMateSelectionProtocol() (in module pybrops.breed.prot.sel.BinaryMateSelectionProtocol) check_is_BinaryMateSelectionSolution() (in module pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution) check_is_BinaryOptimizationAlgorithm() (in module pybrops.opt.algo.BinaryOptimizationAlgorithm) check_is_BinaryProblem() (in module pybrops.opt.prob.BinaryProblem) check_is_BinarySelectionProblem() (in module pybrops.breed.prot.sel.prob.BinarySelectionProblem) check_is_BinarySelectionProtocol() (in module pybrops.breed.prot.sel.BinarySelectionProtocol) check_is_BinarySelectionSolution() (in module pybrops.breed.prot.sel.soln.BinarySelectionSolution) check_is_BinarySolution() (in module pybrops.opt.soln.BinarySolution) check_is_bool() (in module pybrops.core.error.error_type_python) check_is_BreedingEdge() (in module pybrops.breed.arch.BreedingEdge) check_is_BreedingGraph() (in module pybrops.breed.arch.BreedingGraph) check_is_BreedingNode() (in module pybrops.breed.arch.BreedingNode) check_is_BreedingProgram() (in module pybrops.breed.arch.BreedingProgram) check_is_BreedingValueMatrix() (in module pybrops.popgen.bvmat.BreedingValueMatrix) check_is_BreedingValueProtocol() (in module pybrops.breed.prot.bv.BreedingValueProtocol) check_is_bytes() (in module pybrops.core.error.error_type_python) check_is_callable() (in module pybrops.core.error.error_attr_python) check_is_Callable() (in module pybrops.core.error.error_type_python) check_is_class() (in module pybrops.core.error.error_type_python) check_is_CoancestryLinearGenomicModel() (in module pybrops.model.gmod.CoancestryLinearGenomicModel) check_is_CoancestryMatrix() (in module pybrops.popgen.cmat.CoancestryMatrix) check_is_CoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.CoancestryMatrixFactory) check_is_Complex() (in module pybrops.core.error.error_type_python) check_is_Container() (in module pybrops.core.error.error_type_python) check_is_Copyable() (in module pybrops.core.io.Copyable) check_is_CSVDictInputOutput() (in module pybrops.core.io.CSVDictInputOutput) check_is_CSVInputOutput() (in module pybrops.core.io.CSVInputOutput) check_is_DenseAdditiveDominanceLinearGenomicModel() (in module pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel) check_is_DenseAdditiveGeneticVarianceMatrix() (in module pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix) check_is_DenseAdditiveGenicVarianceMatrix() (in module pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix) check_is_DenseAdditiveLinearGenomicModel() (in module pybrops.model.gmod.DenseAdditiveLinearGenomicModel) check_is_DenseAdditiveProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix) check_is_DenseAdditiveProgenyGenicCovarianceMatrix() (in module pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix) check_is_DenseBreedingValueMatrix() (in module pybrops.popgen.bvmat.DenseBreedingValueMatrix) check_is_DenseCoancestryMatrix() (in module pybrops.popgen.cmat.DenseCoancestryMatrix) check_is_DenseCoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory) check_is_DenseDihybridDHAdditiveGeneticVarianceMatrix() (in module pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix) check_is_DenseDihybridDHAdditiveGeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory) check_is_DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix) check_is_DenseEstimatedBreedingValueMatrix() (in module pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix) check_is_DenseExpectedMaximumBreedingValueMatrix() (in module pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix) check_is_DenseFourWayDHAdditiveGeneticVarianceMatrix() (in module pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix) check_is_DenseFourWayDHAdditiveGeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory) check_is_DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix) check_is_DenseGeneralizedWeightedCoancestryMatrix() (in module pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix) check_is_DenseGeneralizedWeightedCoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory) check_is_DenseGeneticMappableMatrix() (in module pybrops.popgen.gmap.DenseGeneticMappableMatrix) check_is_DenseGeneticVarianceMatrix() (in module pybrops.model.vmat.DenseGeneticVarianceMatrix) check_is_DenseGenicVarianceMatrix() (in module pybrops.model.vmat.DenseGenicVarianceMatrix) check_is_DenseGenomicEstimatedBreedingValueMatrix() (in module pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix) check_is_DenseGenotypeMatrix() (in module pybrops.popgen.gmat.DenseGenotypeMatrix) check_is_DenseLinearGenomicModel() (in module pybrops.model.gmod.DenseLinearGenomicModel) check_is_DenseMatrix() (in module pybrops.core.mat.DenseMatrix) check_is_DenseMolecularCoancestryMatrix() (in module pybrops.popgen.cmat.DenseMolecularCoancestryMatrix) check_is_DenseMolecularCoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory) check_is_DenseMutableMatrix() (in module pybrops.core.mat.DenseMutableMatrix) check_is_DensePhasedGenotypeMatrix() (in module pybrops.popgen.gmat.DensePhasedGenotypeMatrix) check_is_DensePhasedMatrix() (in module pybrops.core.mat.DensePhasedMatrix) check_is_DensePhasedTaxaVariantMatrix() (in module pybrops.core.mat.DensePhasedTaxaVariantMatrix) check_is_DenseProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix) check_is_DenseProgenyGenicCovarianceMatrix() (in module pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix) check_is_DenseScaledMatrix() (in module pybrops.core.mat.DenseScaledMatrix) check_is_DenseScaledSquareTaxaTraitMatrix() (in module pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix) check_is_DenseSquareMatrix() (in module pybrops.core.mat.DenseSquareMatrix) check_is_DenseSquareTaxaMatrix() (in module pybrops.core.mat.DenseSquareTaxaMatrix) check_is_DenseSquareTaxaSquareTraitMatrix() (in module pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix) check_is_DenseSquareTaxaTraitMatrix() (in module pybrops.core.mat.DenseSquareTaxaTraitMatrix) check_is_DenseSquareTraitMatrix() (in module pybrops.core.mat.DenseSquareTraitMatrix) check_is_DenseTaxaMatrix() (in module pybrops.core.mat.DenseTaxaMatrix) check_is_DenseTaxaTraitMatrix() (in module pybrops.core.mat.DenseTaxaTraitMatrix) check_is_DenseTaxaVariantMatrix() (in module pybrops.core.mat.DenseTaxaVariantMatrix) check_is_DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory) check_is_DenseTraitMatrix() (in module pybrops.core.mat.DenseTraitMatrix) check_is_DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory) check_is_DenseTwoWayDHAdditiveGenicVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory) check_is_DenseVanRadenCoancestryMatrix() (in module pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix) check_is_DenseVanRadenCoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory) check_is_DenseVariantMatrix() (in module pybrops.core.mat.DenseVariantMatrix) check_is_DenseWeightedGenomicEstimatedBreedingValueMatrix() (in module pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix) check_is_DenseYangCoancestryMatrix() (in module pybrops.popgen.cmat.DenseYangCoancestryMatrix) check_is_DenseYangCoancestryMatrixFactory() (in module pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory) check_is_dict() (in module pybrops.core.error.error_type_python) check_is_DictInputOutput() (in module pybrops.core.io.DictInputOutput) check_is_EmigrationOperator() (in module pybrops.breed.arch.EmigrationOperator) check_is_eq() (in module pybrops.core.error.error_value_python) check_is_EvaluationOperator() (in module pybrops.breed.op.eval.EvaluationOperator) check_is_ExpectedMaximumBreedingValueMatrix() (in module pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix) check_is_ExtendedGeneticMap() (in module pybrops.popgen.gmap.ExtendedGeneticMap) check_is_float() (in module pybrops.core.error.error_type_python) check_is_FourWayCross() (in module pybrops.breed.prot.mate.FourWayCross) check_is_FourWayDHCross() (in module pybrops.breed.prot.mate.FourWayDHCross) check_is_frozenset() (in module pybrops.core.error.error_type_python) check_is_Generator() (in module pybrops.core.error.error_type_numpy) check_is_Generator_or_RandomState() (in module pybrops.core.error.error_type_numpy) check_is_GeneticMap() (in module pybrops.popgen.gmap.GeneticMap) check_is_GeneticMapFunction() (in module pybrops.popgen.gmap.GeneticMapFunction) check_is_GeneticMappableMatrix() (in module pybrops.popgen.gmap.GeneticMappableMatrix) check_is_GeneticVarianceMatrix() (in module pybrops.model.vmat.GeneticVarianceMatrix) check_is_GeneticVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory) check_is_GenicVarianceMatrix() (in module pybrops.model.vmat.GenicVarianceMatrix) check_is_GenicVarianceMatrixFactory() (in module pybrops.model.vmat.fcty.GenicVarianceMatrixFactory) check_is_GenomicModel() (in module pybrops.model.gmod.GenomicModel) check_is_GenotypeMatrix() (in module pybrops.popgen.gmat.GenotypeMatrix) check_is_GenotypingProtocol() (in module pybrops.breed.prot.gt.GenotypingProtocol) check_is_GermplasmBank() (in module pybrops.breed.arch.GermplasmBank) check_is_GroupableMatrix() (in module pybrops.core.mat.GroupableMatrix) check_is_gt() (in module pybrops.core.error.error_value_python) check_is_gteq() (in module pybrops.core.error.error_value_python) check_is_h5py_File() (in module pybrops.core.error.error_type_h5py) check_is_HaldaneMapFunction() (in module pybrops.popgen.gmap.HaldaneMapFunction) check_is_HaplotypeMatrix() (in module pybrops.popgen.gmat.HaplotypeMatrix) check_is_HDF5InputOutput() (in module pybrops.core.io.HDF5InputOutput) check_is_ImmigrationOperator() (in module pybrops.breed.arch.ImmigrationOperator) check_is_in_interval_exclusive() (in module pybrops.core.error.error_value_python) check_is_in_interval_inclusive() (in module pybrops.core.error.error_value_python) check_is_InitializationOperator() (in module pybrops.breed.op.init.InitializationOperator) check_is_int() (in module pybrops.core.error.error_type_python) check_is_int_or_inf() (in module pybrops.core.error.error_type_python) check_is_int_or_None() (in module pybrops.core.error.error_type_python) check_is_IntegerMateSelectionProtocol() (in module pybrops.breed.prot.sel.IntegerMateSelectionProtocol) check_is_IntegerMateSelectionSolution() (in module pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution) check_is_IntegerOptimizationAlgorithm() (in module pybrops.opt.algo.IntegerOptimizationAlgorithm) check_is_IntegerProblem() (in module pybrops.opt.prob.IntegerProblem) check_is_IntegerSelectionProblem() (in module pybrops.breed.prot.sel.prob.IntegerSelectionProblem) check_is_IntegerSelectionProtocol() (in module pybrops.breed.prot.sel.IntegerSelectionProtocol) check_is_IntegerSelectionSolution() (in module pybrops.breed.prot.sel.soln.IntegerSelectionSolution) check_is_IntegerSolution() (in module pybrops.opt.soln.IntegerSolution) check_is_Integral() (in module pybrops.core.error.error_type_python) check_is_Integral_or_inf() (in module pybrops.core.error.error_type_python) check_is_Integral_or_ndarray() (in module pybrops.core.error.error_type_numpy) check_is_Integral_or_None() (in module pybrops.core.error.error_type_python) check_is_iterable() (in module pybrops.core.error.error_attr_python) check_is_KosambiMapFunction() (in module pybrops.popgen.gmap.KosambiMapFunction) check_is_LinearGenomicModel() (in module pybrops.model.gmod.LinearGenomicModel) check_is_list() (in module pybrops.core.error.error_type_python) check_is_list_or_tuple() (in module pybrops.core.error.error_type_python) check_is_Logbook() (in module pybrops.breed.op.log.Logbook) check_is_lt() (in module pybrops.core.error.error_value_python) check_is_lteq() (in module pybrops.core.error.error_value_python) check_is_MateSelectionConfiguration() (in module pybrops.breed.prot.sel.cfg.MateSelectionConfiguration) check_is_MateSelectionProtocol() (in module pybrops.breed.prot.sel.MateSelectionProtocol) check_is_MateSelectionSolution() (in module pybrops.breed.prot.sel.soln.MateSelectionSolution) check_is_MatingOperator() (in module pybrops.breed.op.mate.MatingOperator) check_is_MatingProtocol() (in module pybrops.breed.prot.mate.MatingProtocol) check_is_Matrix() (in module pybrops.core.mat.Matrix) check_is_MutableMatrix() (in module pybrops.core.mat.MutableMatrix) check_is_ndarray() (in module pybrops.core.error.error_type_numpy) check_is_neq() (in module pybrops.core.error.error_value_python) check_is_NonlinearGenomicModel() (in module pybrops.model.gmod.NonlinearGenomicModel) check_is_not_None() (in module pybrops.core.error.error_value_python) check_is_NPYInputOutput() (in module pybrops.core.io.NPYInputOutput) check_is_NPZInputOutput() (in module pybrops.core.io.NPZInputOutput) check_is_Number() (in module pybrops.core.error.error_type_python) check_is_Number_or_ndarray() (in module pybrops.core.error.error_type_numpy) check_is_NumPyInputOutput() (in module pybrops.core.io.NumPyInputOutput) check_is_OptimizationAlgorithm() (in module pybrops.opt.algo.OptimizationAlgorithm) (in module pybrops.opt.algo.UnconstrainedOptimizationAlgorithm) check_is_pandas_DataFrame() (in module pybrops.core.error.error_type_pandas) check_is_PandasDictInputOutput() (in module pybrops.core.io.PandasDictInputOutput) check_is_PandasInputOutput() (in module pybrops.core.io.PandasInputOutput) check_is_ParentSelectionOperator() (in module pybrops.breed.op.psel.ParentSelectionOperator) check_is_PhasedGenotypeMatrix() (in module pybrops.popgen.gmat.PhasedGenotypeMatrix) check_is_PhasedHaplotypeMatrix() (in module pybrops.popgen.gmat.PhasedHaplotypeMatrix) check_is_PhasedMatrix() (in module pybrops.core.mat.PhasedMatrix) check_is_PhasedTaxaVariantMatrix() (in module pybrops.core.mat.PhasedTaxaVariantMatrix) check_is_PhenotypingProtocol() (in module pybrops.breed.prot.pt.PhenotypingProtocol) check_is_Problem() (in module pybrops.opt.prob.Problem) check_is_ProgenyGeneticCovarianceMatrix() (in module pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix) check_is_ProgenyGenicCovarianceMatrix() (in module pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix) check_is_PrunableMatrix() (in module pybrops.core.mat.PrunableMatrix) check_is_RandomState() (in module pybrops.core.error.error_type_numpy) check_is_range() (in module pybrops.core.error.error_type_python) check_is_Real() (in module pybrops.core.error.error_type_python) check_is_Real_or_ndarray() (in module pybrops.core.error.error_type_numpy) check_is_RealMateSelectionProtocol() (in module pybrops.breed.prot.sel.RealMateSelectionProtocol) check_is_RealMateSelectionSolution() (in module pybrops.breed.prot.sel.soln.RealMateSelectionSolution) check_is_RealOptimizationAlgorithm() (in module pybrops.opt.algo.RealOptimizationAlgorithm) check_is_RealProblem() (in module pybrops.opt.prob.RealProblem) check_is_RealSelectionProblem() (in module pybrops.breed.prot.sel.prob.RealSelectionProblem) check_is_RealSelectionProtocol() (in module pybrops.breed.prot.sel.RealSelectionProtocol) check_is_RealSelectionSolution() (in module pybrops.breed.prot.sel.soln.RealSelectionSolution) check_is_RealSolution() (in module pybrops.opt.soln.RealSolution) check_is_RecurrentSelectionBreedingProgram() (in module pybrops.breed.arch.RecurrentSelectionBreedingProgram) check_is_rrBLUPModel0() (in module pybrops.model.gmod.rrBLUPModel0) check_is_ScaledMatrix() (in module pybrops.core.mat.ScaledMatrix) check_is_ScaledSquareTaxaTraitMatrix() (in module pybrops.core.mat.ScaledSquareTaxaTraitMatrix) check_is_SelectionConfiguration() (in module pybrops.breed.prot.sel.cfg.SelectionConfiguration) check_is_SelectionProblem() (in module pybrops.breed.prot.sel.prob.SelectionProblem) check_is_SelectionProtocol() (in module pybrops.breed.prot.sel.SelectionProtocol) (in module pybrops.breed.prot.sel.UnconstrainedSelectionProtocol) check_is_SelectionSolution() (in module pybrops.breed.prot.sel.soln.SelectionSolution) check_is_SelfCross() (in module pybrops.breed.prot.mate.SelfCross) check_is_Sequence() (in module pybrops.core.error.error_type_python) check_is_set() (in module pybrops.core.error.error_type_python) check_is_Solution() (in module pybrops.opt.soln.Solution) check_is_SortableMatrix() (in module pybrops.core.mat.SortableMatrix) check_is_SquareMatrix() (in module pybrops.core.mat.SquareMatrix) check_is_SquareTaxaMatrix() (in module pybrops.core.mat.SquareTaxaMatrix) check_is_SquareTaxaSquareTraitMatrix() (in module pybrops.core.mat.SquareTaxaSquareTraitMatrix) check_is_SquareTaxaTraitMatrix() (in module pybrops.core.mat.SquareTaxaTraitMatrix) check_is_SquareTraitMatrix() (in module pybrops.core.mat.SquareTraitMatrix) check_is_StandardGeneticMap() (in module pybrops.popgen.gmap.StandardGeneticMap) check_is_str() (in module pybrops.core.error.error_type_python) check_is_str_or_Integral() (in module pybrops.core.error.error_type_python) check_is_str_or_iterable() (in module pybrops.core.error.error_type_python) check_is_str_or_ndarray() (in module pybrops.core.error.error_type_numpy) check_is_str_or_Sequence() (in module pybrops.core.error.error_type_python) check_is_SubsetMateSelectionProtocol() (in module pybrops.breed.prot.sel.SubsetMateSelectionProtocol) check_is_SubsetMateSelectionSolution() (in module pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution) check_is_SubsetOptimizationAlgorithm() (in module pybrops.opt.algo.SubsetOptimizationAlgorithm) check_is_SubsetProblem() (in module pybrops.opt.prob.SubsetProblem) check_is_SubsetSelectionProblem() (in module pybrops.breed.prot.sel.prob.SubsetSelectionProblem) check_is_SubsetSelectionProtocol() (in module pybrops.breed.prot.sel.SubsetSelectionProtocol) check_is_SubsetSelectionSolution() (in module pybrops.breed.prot.sel.soln.SubsetSelectionSolution) check_is_SubsetSolution() (in module pybrops.opt.soln.SubsetSolution) check_is_SurvivorSelectionOperator() (in module pybrops.breed.op.ssel.SurvivorSelectionOperator) check_is_TaxaMatrix() (in module pybrops.core.mat.TaxaMatrix) check_is_TaxaTraitMatrix() (in module pybrops.core.mat.TaxaTraitMatrix) check_is_TaxaVariantMatrix() (in module pybrops.core.mat.TaxaVariantMatrix) check_is_ThreeWayCross() (in module pybrops.breed.prot.mate.ThreeWayCross) check_is_ThreeWayDHCross() (in module pybrops.breed.prot.mate.ThreeWayDHCross) check_is_TraitMatrix() (in module pybrops.core.mat.TraitMatrix) check_is_tuple() (in module pybrops.core.error.error_type_python) check_is_TwoWayCross() (in module pybrops.breed.prot.mate.TwoWayCross) check_is_TwoWayDHCross() (in module pybrops.breed.prot.mate.TwoWayDHCross) check_is_type() (in module pybrops.core.error.error_type_python) check_is_VariantMatrix() (in module pybrops.core.mat.VariantMatrix) check_is_WeightedGenomicEstimatedBreedingValueMatrix() (in module pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix) check_isinstance() (in module pybrops.core.error.error_type_python) check_len() (in module pybrops.core.error.error_value_python) check_len_eq() (in module pybrops.core.error.error_value_python) check_ndarray_all_gt() (in module pybrops.core.error.error_value_numpy) check_ndarray_all_gteq() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len_eq() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len_gt() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len_gteq() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len_lt() (in module pybrops.core.error.error_value_numpy) check_ndarray_axis_len_lteq() (in module pybrops.core.error.error_value_numpy) check_ndarray_dtype() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_bool() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_bool_or_integer() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_bool_or_number() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_float16() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_float32() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_float64() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_floating() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_int16() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_int32() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_int64() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_int8() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_integer() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_integer_or_floating() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_number() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_object() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_object_or_string() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_real() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_string() (in module pybrops.core.error.error_type_numpy) check_ndarray_dtype_is_unicode() (in module pybrops.core.error.error_type_numpy) check_ndarray_eq() (in module pybrops.core.error.error_value_numpy) check_ndarray_has_value() (in module pybrops.core.error.error_value_numpy) check_ndarray_has_values() (in module pybrops.core.error.error_value_numpy) check_ndarray_in_interval() (in module pybrops.core.error.error_value_numpy) check_ndarray_is_binary() (in module pybrops.core.error.error_value_numpy) check_ndarray_is_hypercube() (in module pybrops.core.error.error_value_numpy) check_ndarray_is_square() (in module pybrops.core.error.error_value_numpy) check_ndarray_is_triu() (in module pybrops.core.error.error_value_numpy) check_ndarray_len_eq() (in module pybrops.core.error.error_value_numpy) check_ndarray_len_gteq() (in module pybrops.core.error.error_value_numpy) check_ndarray_len_is_multiple_of() (in module pybrops.core.error.error_value_numpy) check_ndarray_mean_is_approx() (in module pybrops.core.error.error_value_numpy) check_ndarray_ndim() (in module pybrops.core.error.error_value_numpy) check_ndarray_ndim_gteq() (in module pybrops.core.error.error_value_numpy) check_ndarray_shape_eq() (in module pybrops.core.error.error_value_numpy) check_ndarray_size() (in module pybrops.core.error.error_value_numpy)

check_ndarray_std_is_approx() (in module pybrops.core.error.error_value_numpy) check_ndarray_sum() (in module pybrops.core.error.error_value_numpy) check_pandas_DataFrame_has_column() (in module pybrops.core.error.error_value_pandas) check_pandas_DataFrame_has_column_index() (in module pybrops.core.error.error_value_pandas) check_pandas_DataFrame_has_column_indices() (in module pybrops.core.error.error_value_pandas) check_pandas_DataFrame_has_columns() (in module pybrops.core.error.error_value_pandas) check_pandas_Series_has_index() (in module pybrops.core.error.error_value_pandas) check_pandas_Series_has_indices() (in module pybrops.core.error.error_value_pandas) check_pandas_Series_has_value() (in module pybrops.core.error.error_value_pandas) check_pandas_Series_has_values() (in module pybrops.core.error.error_value_pandas) check_path_exists() (in module pybrops.core.error.error_io_python) check_PhasedGenotypeMatrix_has_vrnt_mask() (in module pybrops.popgen.gmat.PhasedGenotypeMatrix) check_PhasedGenotypeMatrix_has_vrnt_xoprob() (in module pybrops.popgen.gmat.PhasedGenotypeMatrix) check_RealProblem_is_multi_objective() (in module pybrops.opt.prob.RealProblem) check_RealProblem_is_single_objective() (in module pybrops.opt.prob.RealProblem) check_Sequence_all_type() (in module pybrops.core.error.error_type_python) check_Sequence_has_index() (in module pybrops.core.error.error_value_python) check_Sequence_has_indices() (in module pybrops.core.error.error_value_python) check_Sequence_has_value() (in module pybrops.core.error.error_value_python) check_Sequence_has_values() (in module pybrops.core.error.error_value_python) check_Series_all_type() (in module pybrops.core.error.error_type_pandas) check_str_value() (in module pybrops.core.error.error_value_python) check_SubsetProblem_is_multi_objective() (in module pybrops.opt.prob.SubsetProblem) check_SubsetProblem_is_single_objective() (in module pybrops.opt.prob.SubsetProblem) check_tuple_len_eq() (in module pybrops.core.error.error_value_python) cM2d() (in module pybrops.popgen.gmap.util) cmatfcty (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSelectionMixin property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSelectionMixin property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSelectionMixin property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) coancestry() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) CoancestryLinearGenomicModel (class in pybrops.model.gmod.CoancestryLinearGenomicModel) CoancestryMatrix (class in pybrops.popgen.cmat.CoancestryMatrix) CoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.CoancestryMatrixFactory) concat() (pybrops.core.mat.DenseMatrix.DenseMatrix static method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix static method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix class method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix class method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix static method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix static method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix class method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix class method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix class method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix class method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix class method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix class method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix class method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix class method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix class method) (pybrops.core.mat.Matrix.Matrix class method) (pybrops.core.mat.MutableMatrix.MutableMatrix class method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix class method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix class method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix class method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix class method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.SortableMatrix.SortableMatrix class method) (pybrops.core.mat.SquareMatrix.SquareMatrix class method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix class method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix class method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix class method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix class method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix class method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix class method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix class method) (pybrops.core.mat.TraitMatrix.TraitMatrix class method) (pybrops.core.mat.VariantMatrix.VariantMatrix class method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix class method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) 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(pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) Copyable (class in pybrops.core.io.Copyable) cov_D1s() (in module pybrops.model.vmat.util) cov_D1st() (in module pybrops.model.vmat.util) cov_D2s() (in module pybrops.model.vmat.util) cov_D2st() (in module pybrops.model.vmat.util) CSVDictInputOutput (class in pybrops.core.io.CSVDictInputOutput) CSVInputOutput (class in pybrops.core.io.CSVInputOutput) cxSet() (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm method) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm method)

D

daavail() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) dacount() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) dafixed() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) dafreq() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) dapoly() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) data (pybrops.breed.op.log.Logbook.Logbook property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) decn_space (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) decn_space_lower (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) decn_space_upper (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) decn_space_xmap (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property)

deepcopy() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping method) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol method) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping method) (pybrops.core.io.Copyable.Copyable method) (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) delete() (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) delete_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) delete_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) delete_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) delete_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) dense_cross() (in module pybrops.core.util.mate) dense_dh() (in module pybrops.core.util.mate) dense_meiosis() (in module pybrops.core.util.mate) DenseAdditiveDominanceLinearGenomicModel (class in pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel) DenseAdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix) DenseAdditiveGenicVarianceMatrix (class in pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix) DenseAdditiveLinearGenomicModel (class in pybrops.model.gmod.DenseAdditiveLinearGenomicModel) DenseAdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix) DenseAdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix) DenseBreedingValueMatrix (class in pybrops.popgen.bvmat.DenseBreedingValueMatrix) DenseCoancestryMatrix (class in pybrops.popgen.cmat.DenseCoancestryMatrix) DenseCoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory) DenseDihybridDHAdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix) DenseDihybridDHAdditiveGeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory) DenseDihybridDHAdditiveGenicVarianceMatrix (class in pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix) DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix) DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix) DenseEstimatedBreedingValueMatrix (class in pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix) DenseExpectedMaximumBreedingValueMatrix (class in pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix) DenseFourWayDHAdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix) DenseFourWayDHAdditiveGeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory) DenseFourWayDHAdditiveGenicVarianceMatrix (class in pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix) DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix) DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix) DenseGeneralizedWeightedCoancestryMatrix (class in pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix) DenseGeneralizedWeightedCoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory) DenseGeneticMappableMatrix (class in pybrops.popgen.gmap.DenseGeneticMappableMatrix) DenseGeneticVarianceMatrix (class in pybrops.model.vmat.DenseGeneticVarianceMatrix) DenseGenicVarianceMatrix (class in pybrops.model.vmat.DenseGenicVarianceMatrix) DenseGenomicEstimatedBreedingValueMatrix (class in pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix) DenseGenotypeMatrix (class in pybrops.popgen.gmat.DenseGenotypeMatrix) DenseLinearGenomicModel (class in pybrops.model.gmod.DenseLinearGenomicModel) DenseMaskedPhasedGenotyping (class in pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping) DenseMaskedUnphasedGenotyping (class in pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping) DenseMatrix (class in pybrops.core.mat.DenseMatrix) DenseMolecularCoancestryMatrix (class in pybrops.popgen.cmat.DenseMolecularCoancestryMatrix) DenseMolecularCoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory) DenseMutableMatrix (class in pybrops.core.mat.DenseMutableMatrix) DensePhasedGenotypeMatrix (class in pybrops.popgen.gmat.DensePhasedGenotypeMatrix) DensePhasedMatrix (class in pybrops.core.mat.DensePhasedMatrix) DensePhasedTaxaVariantMatrix (class in pybrops.core.mat.DensePhasedTaxaVariantMatrix) DenseProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix) DenseProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix) DenseScaledMatrix (class in pybrops.core.mat.DenseScaledMatrix) DenseScaledSquareTaxaTraitMatrix (class in pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix) DenseSquare2TaxaTraitMatrix (class in pybrops.core.mat.DenseSquare2TaxaTraitMatrix) DenseSquareMatrix (class in pybrops.core.mat.DenseSquareMatrix) DenseSquareTaxaMatrix (class in pybrops.core.mat.DenseSquareTaxaMatrix) DenseSquareTaxaSquareTraitMatrix (class in pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix) DenseSquareTaxaTraitMatrix (class in pybrops.core.mat.DenseSquareTaxaTraitMatrix) DenseSquareTraitMatrix (class in pybrops.core.mat.DenseSquareTraitMatrix) DenseTaxaMatrix (class in pybrops.core.mat.DenseTaxaMatrix) DenseTaxaTraitMatrix (class in pybrops.core.mat.DenseTaxaTraitMatrix) DenseTaxaVariantMatrix (class in pybrops.core.mat.DenseTaxaVariantMatrix) DenseThreeWayDHAdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix) DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory) DenseThreeWayDHAdditiveGenicVarianceMatrix (class in pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix) DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix) DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix) DenseTraitMatrix (class in pybrops.core.mat.DenseTraitMatrix) DenseTwoWayDHAdditiveGeneticVarianceMatrix (class in pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix) DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory) DenseTwoWayDHAdditiveGenicVarianceMatrix (class in pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix) DenseTwoWayDHAdditiveGenicVarianceMatrixFactory (class in pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory) DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix) DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix) DenseUnphasedGenotyping (class in pybrops.breed.prot.gt.DenseUnphasedGenotyping) DenseVanRadenCoancestryMatrix (class in pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix) DenseVanRadenCoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory) DenseVariantMatrix (class in pybrops.core.mat.DenseVariantMatrix) DenseWeightedGenomicEstimatedBreedingValueMatrix (class in pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix) DenseYangCoancestryMatrix (class in pybrops.popgen.cmat.DenseYangCoancestryMatrix) DenseYangCoancestryMatrixFactory (class in pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory) DictInputOutput (class in pybrops.core.io.DictInputOutput) do() (pybrops.opt.algo.pymoo_addon.MultiObjectiveSteepestDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.SubsetRandomSampling method) dominates() (in module pybrops.opt.algo.pymoo_addon)

E

ebv (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) elementwise (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) elementwise_func (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) elementwise_runner (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) embv (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) emigrate() (pybrops.breed.arch.EmigrationOperator.EmigrationOperator method) EmigrationOperator (class in pybrops.breed.arch.EmigrationOperator) epgc (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) eqcv_trans (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) eqcv_trans_kwargs (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property)

eqcv_wt (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) error_readonly() (in module pybrops.core.error.error_attr_python) estimate() (pybrops.breed.prot.bv.BreedingValueProtocol.BreedingValueProtocol method) (pybrops.breed.prot.bv.MeanPhenotypicBreedingValue.MeanPhenotypicBreedingValue method) (pybrops.breed.prot.bv.TrueBreedingValue.TrueBreedingValue method) EstimatedBreedingValueBinarySelection (class in pybrops.breed.prot.sel.EstimatedBreedingValueSelection) EstimatedBreedingValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem) EstimatedBreedingValueIntegerSelection (class in pybrops.breed.prot.sel.EstimatedBreedingValueSelection) EstimatedBreedingValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem) EstimatedBreedingValueRealSelection (class in pybrops.breed.prot.sel.EstimatedBreedingValueSelection) EstimatedBreedingValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem) EstimatedBreedingValueSelectionMixin (class in pybrops.breed.prot.sel.EstimatedBreedingValueSelection) EstimatedBreedingValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem) EstimatedBreedingValueSubsetSelection (class in pybrops.breed.prot.sel.EstimatedBreedingValueSelection) EstimatedBreedingValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem) evalfn() (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem method) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem method) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem method) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem method) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem method) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem method) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem method) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem method) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem method) (pybrops.opt.prob.BinaryProblem.BinaryProblem method) (pybrops.opt.prob.IntegerProblem.IntegerProblem method) (pybrops.opt.prob.Problem.Problem method) (pybrops.opt.prob.RealProblem.RealProblem method) (pybrops.opt.prob.SubsetProblem.SubsetProblem method) evalop (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) evaluate() (pybrops.breed.op.eval.EvaluationOperator.EvaluationOperator method) EvaluationOperator (class in pybrops.breed.op.eval.EvaluationOperator) evolve() (pybrops.breed.arch.BreedingProgram.BreedingProgram method) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram method) exclude_from_serialization (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) ExpectedMaximumBreedingValueBinarySelection (class in pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection) ExpectedMaximumBreedingValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem) ExpectedMaximumBreedingValueIntegerSelection (class in pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection) ExpectedMaximumBreedingValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem) ExpectedMaximumBreedingValueMatrix (class in pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix) ExpectedMaximumBreedingValueRealSelection (class in pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection) ExpectedMaximumBreedingValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem) ExpectedMaximumBreedingValueSelectionMixin (class in pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection) ExpectedMaximumBreedingValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem) ExpectedMaximumBreedingValueSubsetSelection (class in pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection) ExpectedMaximumBreedingValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem) ExtendedGeneticMap (class in pybrops.popgen.gmap.ExtendedGeneticMap)

F

faavail() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) facount() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) fafixed() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) fafreq() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) family (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) family_counter (pybrops.breed.prot.mate.FourWayCross.FourWayCross property) (pybrops.breed.prot.mate.FourWayDHCross.FourWayDHCross property) (pybrops.breed.prot.mate.SelfCross.SelfCross property) (pybrops.breed.prot.mate.ThreeWayCross.ThreeWayCross property) (pybrops.breed.prot.mate.ThreeWayDHCross.ThreeWayDHCross property) (pybrops.breed.prot.mate.TwoWayCross.TwoWayCross property) (pybrops.breed.prot.mate.TwoWayDHCross.TwoWayDHCross property) FamilyEstimatedBreedingValueBinarySelection (class in pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection) FamilyEstimatedBreedingValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem) FamilyEstimatedBreedingValueIntegerSelection (class in pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection) FamilyEstimatedBreedingValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem) FamilyEstimatedBreedingValueRealSelection (class in pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection) FamilyEstimatedBreedingValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem) FamilyEstimatedBreedingValueSelectionMixin (class in pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection) FamilyEstimatedBreedingValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem) FamilyEstimatedBreedingValueSubsetSelection (class in pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection) FamilyEstimatedBreedingValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem) familyid (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) familyix (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) fapoly() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) female1_axis (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) female2_axis (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) female_axis (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) fit() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel class method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel class method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel class method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel class method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel class method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel class method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 class method) fit_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel class method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel class method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel class method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel class method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel class method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel class method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 class method) flattenix() (in module pybrops.core.util.array) fndr_algmod (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) fndr_pgmat (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) FourWayCross (class in pybrops.breed.prot.mate.FourWayCross) FourWayDHCross (class in pybrops.breed.prot.mate.FourWayDHCross) from_algmod() (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix class method) 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(pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory.AdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory.AdditiveGenicVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix class method) from_csv() (pybrops.core.io.CSVInputOutput.CSVInputOutput class method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix class method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix class method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) 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(pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix class method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix class method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix class method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix class method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix class method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix class method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix class method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix class method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix class method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap class method) (pybrops.popgen.gmap.GeneticMap.GeneticMap class method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap class method) from_csv_dict() (pybrops.core.io.CSVDictInputOutput.CSVDictInputOutput class method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel class method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel class method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel class method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel class method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel class method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 class method) from_dict() (pybrops.core.io.DictInputOutput.DictInputOutput class method) from_egmap() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap class method) from_gmat() (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem class method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem class method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem class method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSelectionProblemMixin class method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem class method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix class method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix class method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix class method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix class method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix class method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix class method) (pybrops.popgen.cmat.fcty.CoancestryMatrixFactory.CoancestryMatrixFactory method) (pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory.DenseCoancestryMatrixFactory method) (pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory.DenseGeneralizedWeightedCoancestryMatrixFactory method) (pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory.DenseMolecularCoancestryMatrixFactory method) (pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory.DenseVanRadenCoancestryMatrixFactory method) (pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory.DenseYangCoancestryMatrixFactory method)

from_gmod() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix class method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix class method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory.AdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory.AdditiveGenicVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory method) (pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory.GeneticVarianceMatrixFactory method) (pybrops.model.vmat.fcty.GenicVarianceMatrixFactory.GenicVarianceMatrixFactory method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix class method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix class method) from_hdf5() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping class method) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol class method) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping class method) (pybrops.core.io.HDF5InputOutput.HDF5InputOutput class method) (pybrops.core.mat.DenseMatrix.DenseMatrix class method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix class method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix class method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix class method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix class method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix class method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix class method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix class method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix class method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix class method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix class method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix class method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix class method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix class method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix class method) (pybrops.core.mat.Matrix.Matrix class method) (pybrops.core.mat.MutableMatrix.MutableMatrix class method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix class method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix class method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix class method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix class method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.SortableMatrix.SortableMatrix class method) (pybrops.core.mat.SquareMatrix.SquareMatrix class method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix class method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix class method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix class method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix class method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix class method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix class method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix class method) (pybrops.core.mat.TraitMatrix.TraitMatrix class method) (pybrops.core.mat.VariantMatrix.VariantMatrix class 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(pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel class method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel class method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 class method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix class method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix class method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix class method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix class method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix class method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix class method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix class method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix class method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix class method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix class method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix class method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix class method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix class method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix class method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix class method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix class method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix class method) from_npy() (pybrops.core.io.NPYInputOutput.NPYInputOutput class method) from_npz() (pybrops.core.io.NPZInputOutput.NPZInputOutput class method) from_numpy() (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem class method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem class method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem class method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSelectionProblemMixin class method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem class method) (pybrops.core.io.NumPyInputOutput.NumPyInputOutput class method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix class method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix class method) from_pandas() (pybrops.core.io.PandasInputOutput.PandasInputOutput class method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix class method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix class method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix class method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix class method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix class method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix class method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix class method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix class method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix class method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix class method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix class method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix class method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix class method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix class method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix class method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix class method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix class method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix class method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap class method) (pybrops.popgen.gmap.GeneticMap.GeneticMap class method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap class method) from_pandas_dict() (pybrops.core.io.PandasDictInputOutput.PandasDictInputOutput class method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel class method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel class method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel class method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel class method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel class method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel class method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 class method) from_vcf() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix class method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix class method) FunctionWeight (class in pybrops.opt.prob.FunctionWeight)

G

G_E_Phenotyping (class in pybrops.breed.prot.pt.G_E_Phenotyping) gauss_seidel() (in module pybrops.model.gmod.rrBLUPModel0) gdist1g() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) gdist1p() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) gdist2g() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) gdist2p() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) gebv (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) gebv() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) gebv_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) gegv() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) gegv_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) Generalized1NormGenomicSelection (class in pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection) GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection (class in pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection) GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem) GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection (class in pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection) GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem) GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection (class in pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection) GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem) GeneralizedWeightedGenomicEstimatedBreedingValueSelectionMixin (class in pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection) GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem) GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection (class in pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection) GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem) generic_check_isinstance() (in module pybrops.core.error.error_generic_python) generic_check_ndarray_eq() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_is_square() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_ndim() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_ndim_gteq() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_shape() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_size() (in module pybrops.core.error.error_generic_numpy) generic_check_ndarray_sum() (in module pybrops.core.error.error_generic_numpy) GeneticMap (class in pybrops.popgen.gmap.GeneticMap) GeneticMapFunction (class in pybrops.popgen.gmap.GeneticMapFunction) GeneticMappableMatrix (class in pybrops.popgen.gmap.GeneticMappableMatrix) GeneticVarianceMatrix (class in pybrops.model.vmat.GeneticVarianceMatrix) GeneticVarianceMatrixFactory (class in pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory) GenicVarianceMatrix (class in pybrops.model.vmat.GenicVarianceMatrix) GenicVarianceMatrixFactory (class in pybrops.model.vmat.fcty.GenicVarianceMatrixFactory) geno (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) genome (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) GenomicEstimatedBreedingValueBinarySelection (class in pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection) GenomicEstimatedBreedingValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem) GenomicEstimatedBreedingValueIntegerSelection (class in pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection) GenomicEstimatedBreedingValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem) GenomicEstimatedBreedingValueRealSelection (class in pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection) GenomicEstimatedBreedingValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem) GenomicEstimatedBreedingValueSelectionMixin (class in pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection) GenomicEstimatedBreedingValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem) GenomicEstimatedBreedingValueSubsetSelection (class in pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection) GenomicEstimatedBreedingValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem) GenomicModel (class in pybrops.model.gmod.GenomicModel) genotype() (pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping.DenseMaskedPhasedGenotyping method) (pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping.DenseMaskedUnphasedGenotyping method) (pybrops.breed.prot.gt.DenseUnphasedGenotyping.DenseUnphasedGenotyping method) (pybrops.breed.prot.gt.GenotypingProtocol.GenotypingProtocol method) GenotypeBuilderSelectionMixin (class in pybrops.breed.prot.sel.GenotypeBuilderSelection) GenotypeBuilderSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem) GenotypeBuilderSubsetSelection (class in pybrops.breed.prot.sel.GenotypeBuilderSelection) GenotypeBuilderSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem) GenotypeMatrix (class in pybrops.popgen.gmat.GenotypeMatrix) GenotypingProtocol (class in pybrops.breed.prot.gt.GenotypingProtocol) GermplasmBank (class in pybrops.breed.arch.GermplasmBank) get_axis() (in module pybrops.core.util.array) gmapfn (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) gmod (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) gpmod (pybrops.breed.prot.bv.TrueBreedingValue.TrueBreedingValue property) (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol property) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping property) graph (pybrops.breed.arch.BreedingGraph.BreedingGraph property) group() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

group_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) group_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) GroupableMatrix (class in pybrops.core.mat.GroupableMatrix) gtcount() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) gtfreq() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) gwgebv (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property)

H

h5py_File_has_group() (in module pybrops.core.util.h5py) h5py_File_is_readable() (in module pybrops.core.util.h5py) h5py_File_is_writable() (in module pybrops.core.util.h5py) h5py_File_read_dict() (in module pybrops.core.util.h5py) h5py_File_read_int() (in module pybrops.core.util.h5py) h5py_File_read_ndarray() (in module pybrops.core.util.h5py) h5py_File_read_ndarray_int() (in module pybrops.core.util.h5py) h5py_File_read_ndarray_int8() (in module pybrops.core.util.h5py) h5py_File_read_ndarray_utf8() (in module pybrops.core.util.h5py) h5py_File_read_utf8() (in module pybrops.core.util.h5py) h5py_File_write_dict() (in module pybrops.core.util.h5py) HaldaneMapFunction (class in pybrops.popgen.gmap.HaldaneMapFunction) haplobin() (in module pybrops.core.util.haplo) haplobin_bounds() (in module pybrops.core.util.haplo) haplomat (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) haplomat() (in module pybrops.core.util.haplo) HaplotypeMatrix (class in pybrops.popgen.gmat.HaplotypeMatrix) has_spline() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method)

hcount() (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) HDF5InputOutput (class in pybrops.core.io.HDF5InputOutput) hfreq() (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) hillclimb() (pybrops.opt.algo.pymoo_addon.MultiObjectiveSteepestDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticDescentHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticHillClimberMutation method) (pybrops.opt.algo.pymoo_addon.MutatorA method) (pybrops.opt.algo.pymoo_addon.MutatorB method) (pybrops.opt.algo.pymoo_addon.MutatorF method) (pybrops.opt.algo.pymoo_addon.StochasticHillClimberMutation method) human2bytes() (in module pybrops.core.util.subroutines) hyperparams (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property)

I

immigrate() (pybrops.breed.arch.ImmigrationOperator.ImmigrationOperator method) ImmigrationOperator (class in pybrops.breed.arch.ImmigrationOperator) incorp() (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) incorp_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) incorp_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) incorp_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) incorp_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) ineqcv_trans (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) ineqcv_trans_kwargs (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) ineqcv_wt (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property)

InitializationOperator (class in pybrops.breed.op.init.InitializationOperator) initialize() (pybrops.breed.arch.BreedingProgram.BreedingProgram method) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram method) (pybrops.breed.op.init.InitializationOperator.InitializationOperator method) initop (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) insert() (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) insert_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) insert_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) insert_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) insert_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) IntegerGeneticAlgorithm (class in pybrops.opt.algo.IntegerGeneticAlgorithm) IntegerMateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration) IntegerMateSelectionProblem (class in pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem) IntegerMateSelectionProtocol (class in pybrops.breed.prot.sel.IntegerMateSelectionProtocol) IntegerMateSelectionSolution (class in pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution) IntegerOptimizationAlgorithm (class in pybrops.opt.algo.IntegerOptimizationAlgorithm) IntegerPolynomialMutation (class in pybrops.opt.algo.pymoo_addon) IntegerProblem (class in pybrops.opt.prob.IntegerProblem) IntegerSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration) IntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.IntegerSelectionProblem) IntegerSelectionProtocol (class in pybrops.breed.prot.sel.IntegerSelectionProtocol) IntegerSelectionSolution (class in pybrops.breed.prot.sel.soln.IntegerSelectionSolution) IntegerSimulatedBinaryCrossover (class in pybrops.opt.algo.pymoo_addon) IntegerSolution (class in pybrops.opt.soln.IntegerSolution) interp_genpos() (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) interp_gmap() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) interp_xoprob() (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) inverse() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) invert (pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping.DenseMaskedPhasedGenotyping property) (pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping.DenseMaskedUnphasedGenotyping property) invmapfn() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) is_congruent() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) is_grouped() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) is_grouped_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) is_grouped_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) is_initialized() (pybrops.breed.arch.BreedingProgram.BreedingProgram method) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram method) is_pareto_efficient() (in module pybrops.core.util.pareto) is_positive_semidefinite() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) is_square() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) is_square_taxa() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) is_square_trait() (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) iterlen() (in module pybrops.core.util.iterator)

K

kinship() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method)

KosambiMapFunction (class in pybrops.popgen.gmap.KosambiMapFunction)

L

L1NormGenomicBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem) L1NormGenomicIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem) L1NormGenomicRealSelectionProblem (class in pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem) L1NormGenomicSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem) L1NormGenomicSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem) L2NormGenomicBinarySelection (class in pybrops.breed.prot.sel.L2NormGenomicSelection) L2NormGenomicBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem) L2NormGenomicIntegerSelection (class in pybrops.breed.prot.sel.L2NormGenomicSelection) L2NormGenomicIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem) L2NormGenomicRealSelection (class in pybrops.breed.prot.sel.L2NormGenomicSelection) L2NormGenomicRealSelectionProblem (class in pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem) L2NormGenomicSelectionMixin (class in pybrops.breed.prot.sel.L2NormGenomicSelection) L2NormGenomicSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem) L2NormGenomicSubsetSelection (class in pybrops.breed.prot.sel.L2NormGenomicSelection) L2NormGenomicSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem) lamb (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm property) latentfn() (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem method) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem method) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem method) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem method) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem method) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem method) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem method) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem method) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem method) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem method) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem method) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem method) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem method) lexsort() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) lexsort_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

lexsort_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) lexsort_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) LinearGenomicModel (class in pybrops.model.gmod.LinearGenomicModel) location (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.ScaledMatrix.ScaledMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) log_evaluate() (pybrops.breed.op.log.Logbook.Logbook method) log_initialize() (pybrops.breed.op.log.Logbook.Logbook method) log_mate() (pybrops.breed.op.log.Logbook.Logbook method) log_pselect() (pybrops.breed.op.log.Logbook.Logbook method) log_sselect() (pybrops.breed.op.log.Logbook.Logbook method) Logbook (class in pybrops.breed.op.log.Logbook) lsl() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) lsl_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method)

M

M (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm property) maf() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) male1_axis (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) male2_axis (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) male_axis (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) mapfn() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) mat (pybrops.core.mat.DenseMatrix.DenseMatrix property) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix property) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix property) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.GroupableMatrix.GroupableMatrix property) (pybrops.core.mat.Matrix.Matrix property) (pybrops.core.mat.MutableMatrix.MutableMatrix property) (pybrops.core.mat.PhasedMatrix.PhasedMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.PrunableMatrix.PrunableMatrix property) (pybrops.core.mat.ScaledMatrix.ScaledMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SortableMatrix.SortableMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) mat_asformat() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) mat_dh() (in module pybrops.breed.prot.mate.util) mat_format (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) mat_mate() (in module pybrops.breed.prot.mate.util) mat_meiosis() (in module pybrops.breed.prot.mate.util) mat_ndim (pybrops.core.mat.DenseMatrix.DenseMatrix property) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix property) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix property) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.GroupableMatrix.GroupableMatrix property) (pybrops.core.mat.Matrix.Matrix property) (pybrops.core.mat.MutableMatrix.MutableMatrix property) (pybrops.core.mat.PhasedMatrix.PhasedMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.PrunableMatrix.PrunableMatrix property) (pybrops.core.mat.ScaledMatrix.ScaledMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SortableMatrix.SortableMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) mat_shape (pybrops.core.mat.DenseMatrix.DenseMatrix property) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix property) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix property) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.GroupableMatrix.GroupableMatrix property) (pybrops.core.mat.Matrix.Matrix property) (pybrops.core.mat.MutableMatrix.MutableMatrix property) (pybrops.core.mat.PhasedMatrix.PhasedMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.PrunableMatrix.PrunableMatrix property) (pybrops.core.mat.ScaledMatrix.ScaledMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SortableMatrix.SortableMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) mate() (pybrops.breed.op.mate.MatingOperator.MatingOperator method) (pybrops.breed.prot.mate.FourWayCross.FourWayCross method) (pybrops.breed.prot.mate.FourWayDHCross.FourWayDHCross method) (pybrops.breed.prot.mate.MatingProtocol.MatingProtocol method) (pybrops.breed.prot.mate.SelfCross.SelfCross method) (pybrops.breed.prot.mate.ThreeWayCross.ThreeWayCross method) (pybrops.breed.prot.mate.ThreeWayDHCross.ThreeWayDHCross method) (pybrops.breed.prot.mate.TwoWayCross.TwoWayCross method) (pybrops.breed.prot.mate.TwoWayDHCross.TwoWayDHCross method) mateop (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) mateprot (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) MateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.MateSelectionConfiguration) MateSelectionProblem (class in pybrops.breed.prot.sel.prob.MateSelectionProblem) MateSelectionProtocol (class in pybrops.breed.prot.sel.MateSelectionProtocol) MateSelectionSolution (class in pybrops.breed.prot.sel.soln.MateSelectionSolution) MatingOperator (class in pybrops.breed.op.mate.MatingOperator) MatingProtocol (class in pybrops.breed.prot.mate.MatingProtocol) Matrix (class in pybrops.core.mat.Matrix) matrix_is_sorted() (in module pybrops.core.util.subroutines) max() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) max_inbreeding() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) MaximizingFunctionWeight (class in pybrops.opt.prob.FunctionWeight) mean() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) MeanExpectedHeterozygosityBinarySelection (class in pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection) MeanExpectedHeterozygosityBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem) MeanExpectedHeterozygosityIntegerSelection (class in pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection) MeanExpectedHeterozygosityIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem) MeanExpectedHeterozygosityRealSelection (class in pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection) MeanExpectedHeterozygosityRealSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem) MeanExpectedHeterozygositySelectionMixin (class in pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection) MeanExpectedHeterozygositySelectionProblemMixin (class in pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem) MeanExpectedHeterozygositySubsetSelection (class in pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection) MeanExpectedHeterozygositySubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem) MeanGenomicRelationshipBinarySelection (class in pybrops.breed.prot.sel.MeanGenomicRelationshipSelection) MeanGenomicRelationshipBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem) MeanGenomicRelationshipIntegerSelection (class in pybrops.breed.prot.sel.MeanGenomicRelationshipSelection) MeanGenomicRelationshipIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem) MeanGenomicRelationshipRealSelection (class in pybrops.breed.prot.sel.MeanGenomicRelationshipSelection) MeanGenomicRelationshipRealSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem) MeanGenomicRelationshipSelectionMixin (class in pybrops.breed.prot.sel.MeanGenomicRelationshipSelection) MeanGenomicRelationshipSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem) MeanGenomicRelationshipSubsetSelection (class in pybrops.breed.prot.sel.MeanGenomicRelationshipSelection) MeanGenomicRelationshipSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem) MeanPhenotypicBreedingValue (class in pybrops.breed.prot.bv.MeanPhenotypicBreedingValue) meh() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) mem (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) method (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) mhf() (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) min() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) min_inbreeding() (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) minimize() (pybrops.opt.algo.BinaryGeneticAlgorithm.BinaryGeneticAlgorithm method) (pybrops.opt.algo.BinaryOptimizationAlgorithm.BinaryOptimizationAlgorithm method) (pybrops.opt.algo.IntegerGeneticAlgorithm.IntegerGeneticAlgorithm method) (pybrops.opt.algo.IntegerOptimizationAlgorithm.IntegerOptimizationAlgorithm method) (pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm.NSGA2BinaryGeneticAlgorithm method) (pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm.NSGA2IntegerGeneticAlgorithm method) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorASubsetGeneticAlgorithm method) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorBSubsetGeneticAlgorithm method) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2SteepestDescentSubsetGeneticAlgorithm method) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2StochasticDescentSubsetGeneticAlgorithm method) (pybrops.opt.algo.NSGA2RealGeneticAlgorithm.NSGA2RealGeneticAlgorithm method) (pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm.NSGA2SubsetGeneticAlgorithm method) (pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm.NSGA3SubsetGeneticAlgorithm method) (pybrops.opt.algo.OptimizationAlgorithm.OptimizationAlgorithm method) (pybrops.opt.algo.RealGeneticAlgorithm.RealGeneticAlgorithm method) (pybrops.opt.algo.RealOptimizationAlgorithm.RealOptimizationAlgorithm method) (pybrops.opt.algo.SortingSteepestDescentSubsetHillClimber.SortingSteepestDescentSubsetHillClimber method) (pybrops.opt.algo.SortingSubsetOptimizationAlgorithm.SortingSubsetOptimizationAlgorithm method) (pybrops.opt.algo.SteepestDescentSubsetHillClimber.SteepestDescentSubsetHillClimber method) (pybrops.opt.algo.SubsetGeneticAlgorithm.SubsetGeneticAlgorithm method) (pybrops.opt.algo.SubsetOptimizationAlgorithm.SubsetOptimizationAlgorithm method) MinimizingFunctionWeight (class in pybrops.opt.prob.FunctionWeight) mkrwt (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) moalgo (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property)

model_name (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) module pybrops pybrops.breed pybrops.breed.arch pybrops.breed.arch.BreedingEdge pybrops.breed.arch.BreedingGraph pybrops.breed.arch.BreedingNode pybrops.breed.arch.BreedingProgram pybrops.breed.arch.EmigrationOperator pybrops.breed.arch.GermplasmBank pybrops.breed.arch.ImmigrationOperator pybrops.breed.arch.RecurrentSelectionBreedingProgram pybrops.breed.op pybrops.breed.op.eval pybrops.breed.op.eval.EvaluationOperator pybrops.breed.op.init pybrops.breed.op.init.InitializationOperator pybrops.breed.op.log pybrops.breed.op.log.Logbook pybrops.breed.op.mate pybrops.breed.op.mate.MatingOperator pybrops.breed.op.psel pybrops.breed.op.psel.ParentSelectionOperator pybrops.breed.op.ssel pybrops.breed.op.ssel.SurvivorSelectionOperator pybrops.breed.prot pybrops.breed.prot.bv pybrops.breed.prot.bv.BreedingValueProtocol pybrops.breed.prot.bv.MeanPhenotypicBreedingValue pybrops.breed.prot.bv.TrueBreedingValue pybrops.breed.prot.gt pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping pybrops.breed.prot.gt.DenseUnphasedGenotyping pybrops.breed.prot.gt.GenotypingProtocol pybrops.breed.prot.mate pybrops.breed.prot.mate.FourWayCross pybrops.breed.prot.mate.FourWayDHCross pybrops.breed.prot.mate.MatingProtocol pybrops.breed.prot.mate.SelfCross pybrops.breed.prot.mate.ThreeWayCross pybrops.breed.prot.mate.ThreeWayDHCross pybrops.breed.prot.mate.TwoWayCross pybrops.breed.prot.mate.TwoWayDHCross pybrops.breed.prot.mate.util pybrops.breed.prot.pt pybrops.breed.prot.pt.G_E_Phenotyping pybrops.breed.prot.pt.PhenotypingProtocol pybrops.breed.prot.pt.TruePhenotyping pybrops.breed.prot.sel pybrops.breed.prot.sel.BinaryMateSelectionProtocol pybrops.breed.prot.sel.BinarySelectionProtocol pybrops.breed.prot.sel.cfg pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration pybrops.breed.prot.sel.cfg.MateSelectionConfiguration pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration pybrops.breed.prot.sel.cfg.RealSelectionConfiguration pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin pybrops.breed.prot.sel.cfg.SelectionConfiguration pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration pybrops.breed.prot.sel.EstimatedBreedingValueSelection pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection pybrops.breed.prot.sel.GenotypeBuilderSelection pybrops.breed.prot.sel.IntegerMateSelectionProtocol pybrops.breed.prot.sel.IntegerSelectionProtocol pybrops.breed.prot.sel.L1NormGenomicSelection pybrops.breed.prot.sel.L2NormGenomicSelection pybrops.breed.prot.sel.MateSelectionProtocol pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection pybrops.breed.prot.sel.MeanGenomicRelationshipSelection pybrops.breed.prot.sel.MultiObjectiveGenomicSelection pybrops.breed.prot.sel.OptimalContributionSelection pybrops.breed.prot.sel.OptimalHaploidValueSelection pybrops.breed.prot.sel.OptimalPopulationValueSelection pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection pybrops.breed.prot.sel.prob pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem pybrops.breed.prot.sel.prob.BinarySelectionProblem pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem pybrops.breed.prot.sel.prob.IntegerSelectionProblem pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem pybrops.breed.prot.sel.prob.MateSelectionProblem pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem pybrops.breed.prot.sel.prob.RandomSelectionProblem pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem pybrops.breed.prot.sel.prob.RealMateSelectionProblem pybrops.breed.prot.sel.prob.RealSelectionProblem pybrops.breed.prot.sel.prob.SelectionProblem pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem pybrops.breed.prot.sel.prob.SubsetSelectionProblem pybrops.breed.prot.sel.prob.trans pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem pybrops.breed.prot.sel.RandomSelection pybrops.breed.prot.sel.RealMateSelectionProtocol pybrops.breed.prot.sel.RealSelectionProtocol pybrops.breed.prot.sel.SelectionProtocol pybrops.breed.prot.sel.soln pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution pybrops.breed.prot.sel.soln.BinarySelectionSolution pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution pybrops.breed.prot.sel.soln.IntegerSelectionSolution pybrops.breed.prot.sel.soln.MateSelectionSolution pybrops.breed.prot.sel.soln.RealMateSelectionSolution pybrops.breed.prot.sel.soln.RealSelectionSolution pybrops.breed.prot.sel.soln.SelectionSolution pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution pybrops.breed.prot.sel.soln.SubsetSelectionSolution pybrops.breed.prot.sel.SubsetMateSelectionProtocol pybrops.breed.prot.sel.SubsetSelectionProtocol pybrops.breed.prot.sel.targetfn pybrops.breed.prot.sel.transfn pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating pybrops.breed.prot.sel.UnconstrainedSelectionProtocol pybrops.breed.prot.sel.UsefulnessCriterionSelection pybrops.breed.prot.sel.WeightedGenomicSelection pybrops.breed.prot.sel.weightfn pybrops.core pybrops.core.error pybrops.core.error.error_attr_python pybrops.core.error.error_generic_numpy pybrops.core.error.error_generic_python pybrops.core.error.error_io_python pybrops.core.error.error_type_h5py pybrops.core.error.error_type_numpy pybrops.core.error.error_type_pandas pybrops.core.error.error_type_python pybrops.core.error.error_value_h5py pybrops.core.error.error_value_numpy pybrops.core.error.error_value_pandas pybrops.core.error.error_value_python pybrops.core.io pybrops.core.io.Copyable pybrops.core.io.CSVDictInputOutput pybrops.core.io.CSVInputOutput pybrops.core.io.DictInputOutput pybrops.core.io.HDF5InputOutput pybrops.core.io.NPYInputOutput pybrops.core.io.NPZInputOutput pybrops.core.io.NumPyInputOutput pybrops.core.io.PandasDictInputOutput pybrops.core.io.PandasInputOutput pybrops.core.mat pybrops.core.mat.DenseMatrix pybrops.core.mat.DenseMutableMatrix pybrops.core.mat.DensePhasedMatrix pybrops.core.mat.DensePhasedTaxaVariantMatrix pybrops.core.mat.DenseScaledMatrix pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix pybrops.core.mat.DenseSquare2TaxaTraitMatrix pybrops.core.mat.DenseSquareMatrix pybrops.core.mat.DenseSquareTaxaMatrix pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix pybrops.core.mat.DenseSquareTaxaTraitMatrix pybrops.core.mat.DenseSquareTraitMatrix pybrops.core.mat.DenseTaxaMatrix pybrops.core.mat.DenseTaxaTraitMatrix pybrops.core.mat.DenseTaxaVariantMatrix pybrops.core.mat.DenseTraitMatrix pybrops.core.mat.DenseVariantMatrix pybrops.core.mat.GroupableMatrix pybrops.core.mat.Matrix pybrops.core.mat.MutableMatrix pybrops.core.mat.PhasedMatrix pybrops.core.mat.PhasedTaxaVariantMatrix pybrops.core.mat.PrunableMatrix pybrops.core.mat.ScaledMatrix pybrops.core.mat.ScaledSquareTaxaTraitMatrix pybrops.core.mat.SortableMatrix pybrops.core.mat.SquareMatrix pybrops.core.mat.SquareTaxaMatrix pybrops.core.mat.SquareTaxaSquareTraitMatrix pybrops.core.mat.SquareTaxaTraitMatrix pybrops.core.mat.SquareTraitMatrix pybrops.core.mat.TaxaMatrix pybrops.core.mat.TaxaTraitMatrix pybrops.core.mat.TaxaVariantMatrix pybrops.core.mat.TraitMatrix pybrops.core.mat.VariantMatrix pybrops.core.random pybrops.core.random.prng pybrops.core.random.sampling pybrops.core.util pybrops.core.util.array pybrops.core.util.h5py pybrops.core.util.haplo pybrops.core.util.iterator pybrops.core.util.mate pybrops.core.util.pareto pybrops.core.util.subroutines pybrops.core.util.trans pybrops.model pybrops.model.embvmat pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix pybrops.model.gmod pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel pybrops.model.gmod.AdditiveDominanceLinearGenomicModel pybrops.model.gmod.AdditiveLinearGenomicModel pybrops.model.gmod.CoancestryLinearGenomicModel pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel pybrops.model.gmod.DenseAdditiveLinearGenomicModel pybrops.model.gmod.DenseLinearGenomicModel pybrops.model.gmod.GenomicModel pybrops.model.gmod.LinearGenomicModel pybrops.model.gmod.NonlinearGenomicModel pybrops.model.gmod.rrBLUPModel0 pybrops.model.pcvmat pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix pybrops.model.vmat pybrops.model.vmat.AdditiveGeneticVarianceMatrix pybrops.model.vmat.AdditiveGenicVarianceMatrix pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix pybrops.model.vmat.DenseGeneticVarianceMatrix pybrops.model.vmat.DenseGenicVarianceMatrix pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix pybrops.model.vmat.fcty pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory pybrops.model.vmat.fcty.GenicVarianceMatrixFactory pybrops.model.vmat.GeneticVarianceMatrix pybrops.model.vmat.GenicVarianceMatrix pybrops.model.vmat.util pybrops.model.wgebvmat pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix pybrops.opt pybrops.opt.algo pybrops.opt.algo.BinaryGeneticAlgorithm pybrops.opt.algo.BinaryOptimizationAlgorithm pybrops.opt.algo.IntegerGeneticAlgorithm pybrops.opt.algo.IntegerOptimizationAlgorithm pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm pybrops.opt.algo.NSGA2RealGeneticAlgorithm pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm pybrops.opt.algo.OptimizationAlgorithm pybrops.opt.algo.pymoo_addon pybrops.opt.algo.RealGeneticAlgorithm pybrops.opt.algo.RealOptimizationAlgorithm pybrops.opt.algo.SortingSteepestDescentSubsetHillClimber pybrops.opt.algo.SortingSubsetOptimizationAlgorithm pybrops.opt.algo.SteepestDescentSubsetHillClimber pybrops.opt.algo.SubsetGeneticAlgorithm pybrops.opt.algo.SubsetOptimizationAlgorithm pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm pybrops.opt.algo.UnconstrainedOptimizationAlgorithm pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber pybrops.opt.prob pybrops.opt.prob.BinaryProblem pybrops.opt.prob.FunctionWeight pybrops.opt.prob.IntegerProblem pybrops.opt.prob.Problem pybrops.opt.prob.RealProblem pybrops.opt.prob.SubsetProblem pybrops.opt.soln pybrops.opt.soln.BinarySolution pybrops.opt.soln.IntegerSolution pybrops.opt.soln.RealSolution pybrops.opt.soln.Solution pybrops.opt.soln.SubsetSolution pybrops.popgen pybrops.popgen.bvmat pybrops.popgen.bvmat.BreedingValueMatrix pybrops.popgen.bvmat.DenseBreedingValueMatrix pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix pybrops.popgen.cmat pybrops.popgen.cmat.CoancestryMatrix pybrops.popgen.cmat.DenseCoancestryMatrix pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix pybrops.popgen.cmat.DenseMolecularCoancestryMatrix pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix pybrops.popgen.cmat.DenseYangCoancestryMatrix pybrops.popgen.cmat.fcty pybrops.popgen.cmat.fcty.CoancestryMatrixFactory pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory pybrops.popgen.gmap pybrops.popgen.gmap.DenseGeneticMappableMatrix pybrops.popgen.gmap.ExtendedGeneticMap pybrops.popgen.gmap.GeneticMap pybrops.popgen.gmap.GeneticMapFunction pybrops.popgen.gmap.GeneticMappableMatrix pybrops.popgen.gmap.HaldaneMapFunction pybrops.popgen.gmap.KosambiMapFunction pybrops.popgen.gmap.StandardGeneticMap pybrops.popgen.gmap.util pybrops.popgen.gmat pybrops.popgen.gmat.DenseGenotypeMatrix pybrops.popgen.gmat.DensePhasedGenotypeMatrix pybrops.popgen.gmat.GenotypeMatrix pybrops.popgen.gmat.HaplotypeMatrix pybrops.popgen.gmat.PhasedGenotypeMatrix pybrops.popgen.gmat.PhasedHaplotypeMatrix pybrops.test pybrops.test.assert_python mosolve() (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol method) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection method) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol method) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection method) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection method) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection method) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection method) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection method) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol method) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol method) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol method) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol method) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection method) mtprot (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) mu (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm property) MultiObjectiveGenomicMating (class in pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating) MultiObjectiveGenomicMatingProblemMixin (class in pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem) MultiObjectiveGenomicSelectionMixin (class in pybrops.breed.prot.sel.MultiObjectiveGenomicSelection) MultiObjectiveGenomicSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem) MultiObjectiveGenomicSubsetMatingProblem (class in pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem) MultiObjectiveGenomicSubsetSelection (class in pybrops.breed.prot.sel.MultiObjectiveGenomicSelection) MultiObjectiveGenomicSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem) MultiObjectiveSteepestDescentHillClimberMutation (class in pybrops.opt.algo.pymoo_addon) MultiObjectiveStochasticDescentHillClimberMutation (class in pybrops.opt.algo.pymoo_addon) MultiObjectiveStochasticHillClimberMutation (class in pybrops.opt.algo.pymoo_addon) MutableMatrix (class in pybrops.core.mat.MutableMatrix) MutatorA (class in pybrops.opt.algo.pymoo_addon) MutatorB (class in pybrops.opt.algo.pymoo_addon) MutatorF (class in pybrops.opt.algo.pymoo_addon) mutSet() (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm method) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm method)

N

n_eq_constr (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) n_ieq_constr (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) n_obj (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) n_var (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) nafixed() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) napoly() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) nbestfndr (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSelectionMixin property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) nconfig (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) ncross (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) ndecn (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) ndset_trans (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) ndset_trans_kwargs (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) ndset_wt (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) nenv (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) neqcv (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) nexplan (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nexplan_beta (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nexplan_u (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nexplan_u_a (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nexplan_u_d (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) nexplan_u_i (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) nexplan_u_misc (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nfemale (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) nfemale1 (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) nfemale2 (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) ngen (pybrops.opt.algo.BinaryGeneticAlgorithm.BinaryGeneticAlgorithm property) (pybrops.opt.algo.IntegerGeneticAlgorithm.IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm.NSGA2BinaryGeneticAlgorithm property) (pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm.NSGA2IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorASubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorBSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2SteepestDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2StochasticDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2RealGeneticAlgorithm.NSGA2RealGeneticAlgorithm property) (pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm.NSGA2SubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm.NSGA3SubsetGeneticAlgorithm property) (pybrops.opt.algo.RealGeneticAlgorithm.RealGeneticAlgorithm property) (pybrops.opt.algo.SubsetGeneticAlgorithm.SubsetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm property) nhaploblk (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSelectionMixin property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSelectionMixin property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSelectionMixin property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) nhaploblk_chrom() (in module pybrops.core.util.haplo) nineqcv (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property)

nlatent (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) nmale (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) nmale1 (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) nmale2 (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) nmating (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) nobj (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) NonlinearGenomicModel (class in pybrops.model.gmod.NonlinearGenomicModel) not_raises() (in module pybrops.test.assert_python) nparam (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nparam_beta (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nparam_u (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nparam_u_a (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nparam_u_d (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) nparam_u_i (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) nparam_u_misc (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) nparent (pybrops.breed.prot.mate.FourWayCross.FourWayCross property) (pybrops.breed.prot.mate.FourWayDHCross.FourWayDHCross property) (pybrops.breed.prot.mate.MatingProtocol.MatingProtocol property) (pybrops.breed.prot.mate.SelfCross.SelfCross property) (pybrops.breed.prot.mate.ThreeWayCross.ThreeWayCross property) (pybrops.breed.prot.mate.ThreeWayDHCross.ThreeWayDHCross property) (pybrops.breed.prot.mate.TwoWayCross.TwoWayCross property) (pybrops.breed.prot.mate.TwoWayDHCross.TwoWayDHCross property) (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) nphase (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix property) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.PhasedMatrix.PhasedMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) nprogeny (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) NPYInputOutput (class in pybrops.core.io.NPYInputOutput) NPZInputOutput (class in pybrops.core.io.NPZInputOutput) nrecurrent (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) nrefpts (pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm.NSGA3SubsetGeneticAlgorithm property) nrep (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) nself (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) nselindiv (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) NSGA2BinaryGeneticAlgorithm (class in pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm) NSGA2IntegerGeneticAlgorithm (class in pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm) NSGA2MutatorASubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm) NSGA2MutatorBSubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm) NSGA2RealGeneticAlgorithm (class in pybrops.opt.algo.NSGA2RealGeneticAlgorithm) NSGA2SteepestDescentSubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm) NSGA2StochasticDescentSubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm) NSGA2SubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm) NSGA3SubsetGeneticAlgorithm (class in pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm) nsimul (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) nsoln (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) nsquare (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) nsquare_taxa (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) nsquare_trait (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) ntaxa (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) ntrait (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSelectionMixin property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSelectionMixin property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSelectionMixin property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSelectionMixin property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSelectionMixin property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSelectionMixin property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) NumPyInputOutput (class in pybrops.core.io.NumPyInputOutput) nvrnt (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property)

O

obj_trans (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) obj_trans_kwargs (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property)

obj_wt (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) objfn() (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol method) objfn_static() (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection static method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating static method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol static method) objfn_trans (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) objfn_trans_kwargs (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) objfn_vec() (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol method) objfn_vec_static() (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection static method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating static method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol static method) objfn_wt (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) ohvmat (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) OptimalContributionBinarySelection (class in pybrops.breed.prot.sel.OptimalContributionSelection) OptimalContributionBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem) OptimalContributionIntegerSelection (class in pybrops.breed.prot.sel.OptimalContributionSelection) OptimalContributionIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem) OptimalContributionRealSelection (class in pybrops.breed.prot.sel.OptimalContributionSelection) OptimalContributionRealSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem) OptimalContributionSelectionMixin (class in pybrops.breed.prot.sel.OptimalContributionSelection) OptimalContributionSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem) OptimalContributionSubsetSelection (class in pybrops.breed.prot.sel.OptimalContributionSelection) OptimalContributionSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem) OptimalHaploidValueBinarySelection (class in pybrops.breed.prot.sel.OptimalHaploidValueSelection) OptimalHaploidValueBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem) OptimalHaploidValueIntegerSelection (class in pybrops.breed.prot.sel.OptimalHaploidValueSelection) OptimalHaploidValueIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem) OptimalHaploidValueRealSelection (class in pybrops.breed.prot.sel.OptimalHaploidValueSelection) OptimalHaploidValueRealSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem) OptimalHaploidValueSelectionMixin (class in pybrops.breed.prot.sel.OptimalHaploidValueSelection) OptimalHaploidValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem) OptimalHaploidValueSubsetSelection (class in pybrops.breed.prot.sel.OptimalHaploidValueSelection) OptimalHaploidValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem) OptimalPopulationValueSelectionMixin (class in pybrops.breed.prot.sel.OptimalPopulationValueSelection) OptimalPopulationValueSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem) OptimalPopulationValueSubsetSelection (class in pybrops.breed.prot.sel.OptimalPopulationValueSelection) OptimalPopulationValueSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem) optimization_type (pybrops.opt.prob.FunctionWeight.FunctionWeight property) (pybrops.opt.prob.FunctionWeight.MaximizingFunctionWeight property) (pybrops.opt.prob.FunctionWeight.MinimizingFunctionWeight property) OptimizationAlgorithm (class in pybrops.opt.algo.OptimizationAlgorithm) optimize() (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm method) (pybrops.opt.algo.UnconstrainedOptimizationAlgorithm.UnconstrainedOptimizationAlgorithm method) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm method) (pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber.UnconstrainedSteepestAscentSetHillClimber method) outcross_shuffle() (in module pybrops.core.random.sampling)

P

PandasDictInputOutput (class in pybrops.core.io.PandasDictInputOutput) PandasInputOutput (class in pybrops.core.io.PandasInputOutput) ParentSelectionOperator (class in pybrops.breed.op.psel.ParentSelectionOperator) pareto() (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol method) pgmat (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) phase_axis (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix property) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.PhasedMatrix.PhasedMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) PhasedGenotypeMatrix (class in pybrops.popgen.gmat.PhasedGenotypeMatrix) PhasedHaplotypeMatrix (class in pybrops.popgen.gmat.PhasedHaplotypeMatrix) PhasedMatrix (class in pybrops.core.mat.PhasedMatrix) PhasedTaxaVariantMatrix (class in pybrops.core.mat.PhasedTaxaVariantMatrix) phc (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorASubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorBSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2SteepestDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2StochasticDescentSubsetGeneticAlgorithm property) pheno (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) phenotype() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping method) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol method) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping method) PhenotypingProtocol (class in pybrops.breed.prot.pt.PhenotypingProtocol) ploidy (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) pop_size (pybrops.opt.algo.BinaryGeneticAlgorithm.BinaryGeneticAlgorithm property) (pybrops.opt.algo.IntegerGeneticAlgorithm.IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm.NSGA2BinaryGeneticAlgorithm property) (pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm.NSGA2IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorASubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorBSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2SteepestDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2StochasticDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2RealGeneticAlgorithm.NSGA2RealGeneticAlgorithm property) (pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm.NSGA2SubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm.NSGA3SubsetGeneticAlgorithm property) (pybrops.opt.algo.RealGeneticAlgorithm.RealGeneticAlgorithm property) (pybrops.opt.algo.SubsetGeneticAlgorithm.SubsetGeneticAlgorithm property) PopulationAlleleFrequencyDistanceSelectionMixin (class in pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection) PopulationAlleleFrequencyDistanceSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem) PopulationAlleleFrequencyDistanceSubsetSelection (class in pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection) PopulationAlleleFrequencyDistanceSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem) PopulationAlleleUnavailabilitySelectionMixin (class in pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection) PopulationAlleleUnavailabilitySelectionProblemMixin (class in pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem) PopulationAlleleUnavailabilitySubsetSelection (class in pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection) PopulationAlleleUnavailabilitySubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem) predict() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) predict_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) Problem (class in pybrops.opt.prob.Problem) problem() (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol method) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection method) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol method) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection method) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection method) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection method) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection method) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection method) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol method) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol method) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol method) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol method) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection method) progeny_counter (pybrops.breed.prot.mate.FourWayCross.FourWayCross property) (pybrops.breed.prot.mate.FourWayDHCross.FourWayDHCross property) (pybrops.breed.prot.mate.SelfCross.SelfCross property) (pybrops.breed.prot.mate.ThreeWayCross.ThreeWayCross property) (pybrops.breed.prot.mate.ThreeWayDHCross.ThreeWayDHCross property) (pybrops.breed.prot.mate.TwoWayCross.TwoWayCross property) (pybrops.breed.prot.mate.TwoWayDHCross.TwoWayDHCross property) ProgenyGeneticCovarianceMatrix (class in pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix) ProgenyGenicCovarianceMatrix (class in pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix) PrunableMatrix (class in pybrops.core.mat.PrunableMatrix) prune() (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) pselect() (pybrops.breed.op.psel.ParentSelectionOperator.ParentSelectionOperator method) pselop (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) pybrops module pybrops.breed module pybrops.breed.arch module pybrops.breed.arch.BreedingEdge module pybrops.breed.arch.BreedingGraph module pybrops.breed.arch.BreedingNode module pybrops.breed.arch.BreedingProgram module pybrops.breed.arch.EmigrationOperator module pybrops.breed.arch.GermplasmBank module pybrops.breed.arch.ImmigrationOperator module pybrops.breed.arch.RecurrentSelectionBreedingProgram module pybrops.breed.op module pybrops.breed.op.eval module pybrops.breed.op.eval.EvaluationOperator module pybrops.breed.op.init module pybrops.breed.op.init.InitializationOperator module pybrops.breed.op.log module pybrops.breed.op.log.Logbook module pybrops.breed.op.mate module pybrops.breed.op.mate.MatingOperator module pybrops.breed.op.psel module pybrops.breed.op.psel.ParentSelectionOperator module pybrops.breed.op.ssel module pybrops.breed.op.ssel.SurvivorSelectionOperator module pybrops.breed.prot module pybrops.breed.prot.bv module pybrops.breed.prot.bv.BreedingValueProtocol module pybrops.breed.prot.bv.MeanPhenotypicBreedingValue module pybrops.breed.prot.bv.TrueBreedingValue module pybrops.breed.prot.gt module pybrops.breed.prot.gt.DenseMaskedPhasedGenotyping module pybrops.breed.prot.gt.DenseMaskedUnphasedGenotyping module pybrops.breed.prot.gt.DenseUnphasedGenotyping module pybrops.breed.prot.gt.GenotypingProtocol module pybrops.breed.prot.mate module pybrops.breed.prot.mate.FourWayCross module pybrops.breed.prot.mate.FourWayDHCross module pybrops.breed.prot.mate.MatingProtocol module pybrops.breed.prot.mate.SelfCross module pybrops.breed.prot.mate.ThreeWayCross module pybrops.breed.prot.mate.ThreeWayDHCross module pybrops.breed.prot.mate.TwoWayCross module pybrops.breed.prot.mate.TwoWayDHCross module pybrops.breed.prot.mate.util module pybrops.breed.prot.pt module pybrops.breed.prot.pt.G_E_Phenotyping module pybrops.breed.prot.pt.PhenotypingProtocol module pybrops.breed.prot.pt.TruePhenotyping module pybrops.breed.prot.sel module pybrops.breed.prot.sel.BinaryMateSelectionProtocol module pybrops.breed.prot.sel.BinarySelectionProtocol module pybrops.breed.prot.sel.cfg module pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration module pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration module pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration module pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration module pybrops.breed.prot.sel.cfg.MateSelectionConfiguration module pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration module pybrops.breed.prot.sel.cfg.RealSelectionConfiguration module pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin module pybrops.breed.prot.sel.cfg.SelectionConfiguration module pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration module pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration module pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration module pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration module pybrops.breed.prot.sel.EstimatedBreedingValueSelection module pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection module pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection module pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection module pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection module pybrops.breed.prot.sel.GenotypeBuilderSelection module pybrops.breed.prot.sel.IntegerMateSelectionProtocol module pybrops.breed.prot.sel.IntegerSelectionProtocol module pybrops.breed.prot.sel.L1NormGenomicSelection module pybrops.breed.prot.sel.L2NormGenomicSelection module pybrops.breed.prot.sel.MateSelectionProtocol module pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection module pybrops.breed.prot.sel.MeanGenomicRelationshipSelection module pybrops.breed.prot.sel.MultiObjectiveGenomicSelection module pybrops.breed.prot.sel.OptimalContributionSelection module pybrops.breed.prot.sel.OptimalHaploidValueSelection module pybrops.breed.prot.sel.OptimalPopulationValueSelection module pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection module pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection module pybrops.breed.prot.sel.prob module pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem module pybrops.breed.prot.sel.prob.BinarySelectionProblem module pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem module pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem module pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem module pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem module pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem module pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem module pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem module pybrops.breed.prot.sel.prob.IntegerSelectionProblem module pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem module pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem module pybrops.breed.prot.sel.prob.MateSelectionProblem module pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem module pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem module pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem module pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem module pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem module pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem module pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem module pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem module pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem module pybrops.breed.prot.sel.prob.RandomSelectionProblem module pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem module pybrops.breed.prot.sel.prob.RealMateSelectionProblem module pybrops.breed.prot.sel.prob.RealSelectionProblem module pybrops.breed.prot.sel.prob.SelectionProblem module pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem module pybrops.breed.prot.sel.prob.SubsetSelectionProblem module pybrops.breed.prot.sel.prob.trans module pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem module pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem module pybrops.breed.prot.sel.RandomSelection module pybrops.breed.prot.sel.RealMateSelectionProtocol module pybrops.breed.prot.sel.RealSelectionProtocol module pybrops.breed.prot.sel.SelectionProtocol module pybrops.breed.prot.sel.soln module pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution module pybrops.breed.prot.sel.soln.BinarySelectionSolution module pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution module pybrops.breed.prot.sel.soln.IntegerSelectionSolution module pybrops.breed.prot.sel.soln.MateSelectionSolution module pybrops.breed.prot.sel.soln.RealMateSelectionSolution module pybrops.breed.prot.sel.soln.RealSelectionSolution module pybrops.breed.prot.sel.soln.SelectionSolution module pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution module pybrops.breed.prot.sel.soln.SubsetSelectionSolution module

pybrops.breed.prot.sel.SubsetMateSelectionProtocol module pybrops.breed.prot.sel.SubsetSelectionProtocol module pybrops.breed.prot.sel.targetfn module pybrops.breed.prot.sel.transfn module pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection module pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating module pybrops.breed.prot.sel.UnconstrainedSelectionProtocol module pybrops.breed.prot.sel.UsefulnessCriterionSelection module pybrops.breed.prot.sel.WeightedGenomicSelection module pybrops.breed.prot.sel.weightfn module pybrops.core module pybrops.core.error module pybrops.core.error.error_attr_python module pybrops.core.error.error_generic_numpy module pybrops.core.error.error_generic_python module pybrops.core.error.error_io_python module pybrops.core.error.error_type_h5py module pybrops.core.error.error_type_numpy module pybrops.core.error.error_type_pandas module pybrops.core.error.error_type_python module pybrops.core.error.error_value_h5py module pybrops.core.error.error_value_numpy module pybrops.core.error.error_value_pandas module pybrops.core.error.error_value_python module pybrops.core.io module pybrops.core.io.Copyable module pybrops.core.io.CSVDictInputOutput module pybrops.core.io.CSVInputOutput module pybrops.core.io.DictInputOutput module pybrops.core.io.HDF5InputOutput module pybrops.core.io.NPYInputOutput module pybrops.core.io.NPZInputOutput module pybrops.core.io.NumPyInputOutput module pybrops.core.io.PandasDictInputOutput module pybrops.core.io.PandasInputOutput module pybrops.core.mat module pybrops.core.mat.DenseMatrix module pybrops.core.mat.DenseMutableMatrix module pybrops.core.mat.DensePhasedMatrix module pybrops.core.mat.DensePhasedTaxaVariantMatrix module pybrops.core.mat.DenseScaledMatrix module pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix module pybrops.core.mat.DenseSquare2TaxaTraitMatrix module pybrops.core.mat.DenseSquareMatrix module pybrops.core.mat.DenseSquareTaxaMatrix module pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix module pybrops.core.mat.DenseSquareTaxaTraitMatrix module pybrops.core.mat.DenseSquareTraitMatrix module pybrops.core.mat.DenseTaxaMatrix module pybrops.core.mat.DenseTaxaTraitMatrix module pybrops.core.mat.DenseTaxaVariantMatrix module pybrops.core.mat.DenseTraitMatrix module pybrops.core.mat.DenseVariantMatrix module pybrops.core.mat.GroupableMatrix module pybrops.core.mat.Matrix module pybrops.core.mat.MutableMatrix module pybrops.core.mat.PhasedMatrix module pybrops.core.mat.PhasedTaxaVariantMatrix module pybrops.core.mat.PrunableMatrix module pybrops.core.mat.ScaledMatrix module pybrops.core.mat.ScaledSquareTaxaTraitMatrix module pybrops.core.mat.SortableMatrix module pybrops.core.mat.SquareMatrix module pybrops.core.mat.SquareTaxaMatrix module pybrops.core.mat.SquareTaxaSquareTraitMatrix module pybrops.core.mat.SquareTaxaTraitMatrix module pybrops.core.mat.SquareTraitMatrix module pybrops.core.mat.TaxaMatrix module pybrops.core.mat.TaxaTraitMatrix module pybrops.core.mat.TaxaVariantMatrix module pybrops.core.mat.TraitMatrix module pybrops.core.mat.VariantMatrix module pybrops.core.random module pybrops.core.random.prng module pybrops.core.random.sampling module pybrops.core.util module pybrops.core.util.array module pybrops.core.util.h5py module pybrops.core.util.haplo module pybrops.core.util.iterator module pybrops.core.util.mate module pybrops.core.util.pareto module pybrops.core.util.subroutines module pybrops.core.util.trans module pybrops.model module pybrops.model.embvmat module pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix module pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix module pybrops.model.gmod module pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel module pybrops.model.gmod.AdditiveDominanceLinearGenomicModel module pybrops.model.gmod.AdditiveLinearGenomicModel module pybrops.model.gmod.CoancestryLinearGenomicModel module pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel module pybrops.model.gmod.DenseAdditiveLinearGenomicModel module pybrops.model.gmod.DenseLinearGenomicModel module pybrops.model.gmod.GenomicModel module pybrops.model.gmod.LinearGenomicModel module pybrops.model.gmod.NonlinearGenomicModel module pybrops.model.gmod.rrBLUPModel0 module pybrops.model.pcvmat module pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix module pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix module pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix module pybrops.model.vmat module pybrops.model.vmat.AdditiveGeneticVarianceMatrix module pybrops.model.vmat.AdditiveGenicVarianceMatrix module pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix module pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix module pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix module pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix module pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix module pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix module pybrops.model.vmat.DenseGeneticVarianceMatrix module pybrops.model.vmat.DenseGenicVarianceMatrix module pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix module pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix module pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix module pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix module pybrops.model.vmat.fcty module pybrops.model.vmat.fcty.AdditiveGeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.AdditiveGenicVarianceMatrixFactory module pybrops.model.vmat.fcty.DenseDihybridDHAdditiveGeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.DenseFourWayDHAdditiveGeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.DenseThreeWayDHAdditiveGeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.DenseTwoWayDHAdditiveGenicVarianceMatrixFactory module pybrops.model.vmat.fcty.GeneticVarianceMatrixFactory module pybrops.model.vmat.fcty.GenicVarianceMatrixFactory module pybrops.model.vmat.GeneticVarianceMatrix module pybrops.model.vmat.GenicVarianceMatrix module pybrops.model.vmat.util module pybrops.model.wgebvmat module pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix module pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix module pybrops.opt module pybrops.opt.algo module pybrops.opt.algo.BinaryGeneticAlgorithm module pybrops.opt.algo.BinaryOptimizationAlgorithm module pybrops.opt.algo.IntegerGeneticAlgorithm module pybrops.opt.algo.IntegerOptimizationAlgorithm module pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm module pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm module pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm module pybrops.opt.algo.NSGA2RealGeneticAlgorithm module pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm module pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm module pybrops.opt.algo.OptimizationAlgorithm module pybrops.opt.algo.pymoo_addon module pybrops.opt.algo.RealGeneticAlgorithm module pybrops.opt.algo.RealOptimizationAlgorithm module pybrops.opt.algo.SortingSteepestDescentSubsetHillClimber module pybrops.opt.algo.SortingSubsetOptimizationAlgorithm module pybrops.opt.algo.SteepestDescentSubsetHillClimber module pybrops.opt.algo.SubsetGeneticAlgorithm module pybrops.opt.algo.SubsetOptimizationAlgorithm module pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm module pybrops.opt.algo.UnconstrainedOptimizationAlgorithm module pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm module pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber module pybrops.opt.prob module pybrops.opt.prob.BinaryProblem module pybrops.opt.prob.FunctionWeight module pybrops.opt.prob.IntegerProblem module pybrops.opt.prob.Problem module pybrops.opt.prob.RealProblem module pybrops.opt.prob.SubsetProblem module pybrops.opt.soln module pybrops.opt.soln.BinarySolution module pybrops.opt.soln.IntegerSolution module pybrops.opt.soln.RealSolution module pybrops.opt.soln.Solution module pybrops.opt.soln.SubsetSolution module pybrops.popgen module pybrops.popgen.bvmat module pybrops.popgen.bvmat.BreedingValueMatrix module pybrops.popgen.bvmat.DenseBreedingValueMatrix module pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix module pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix module pybrops.popgen.cmat module pybrops.popgen.cmat.CoancestryMatrix module pybrops.popgen.cmat.DenseCoancestryMatrix module pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix module pybrops.popgen.cmat.DenseMolecularCoancestryMatrix module pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix module pybrops.popgen.cmat.DenseYangCoancestryMatrix module pybrops.popgen.cmat.fcty module pybrops.popgen.cmat.fcty.CoancestryMatrixFactory module pybrops.popgen.cmat.fcty.DenseCoancestryMatrixFactory module pybrops.popgen.cmat.fcty.DenseGeneralizedWeightedCoancestryMatrixFactory module pybrops.popgen.cmat.fcty.DenseMolecularCoancestryMatrixFactory module pybrops.popgen.cmat.fcty.DenseVanRadenCoancestryMatrixFactory module pybrops.popgen.cmat.fcty.DenseYangCoancestryMatrixFactory module pybrops.popgen.gmap module pybrops.popgen.gmap.DenseGeneticMappableMatrix module pybrops.popgen.gmap.ExtendedGeneticMap module pybrops.popgen.gmap.GeneticMap module pybrops.popgen.gmap.GeneticMapFunction module pybrops.popgen.gmap.GeneticMappableMatrix module pybrops.popgen.gmap.HaldaneMapFunction module pybrops.popgen.gmap.KosambiMapFunction module pybrops.popgen.gmap.StandardGeneticMap module pybrops.popgen.gmap.util module pybrops.popgen.gmat module pybrops.popgen.gmat.DenseGenotypeMatrix module pybrops.popgen.gmat.DensePhasedGenotypeMatrix module pybrops.popgen.gmat.GenotypeMatrix module pybrops.popgen.gmat.HaplotypeMatrix module pybrops.popgen.gmat.PhasedGenotypeMatrix module pybrops.popgen.gmat.PhasedHaplotypeMatrix module pybrops.test module pybrops.test.assert_python module

R

raises() (in module pybrops.test.assert_python) RandomBinarySelection (class in pybrops.breed.prot.sel.RandomSelection) RandomBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.RandomSelectionProblem) RandomIntegerSelection (class in pybrops.breed.prot.sel.RandomSelection) RandomIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.RandomSelectionProblem) RandomRealSelection (class in pybrops.breed.prot.sel.RandomSelection) RandomRealSelectionProblem (class in pybrops.breed.prot.sel.prob.RandomSelectionProblem) RandomSelectionMixin (class in pybrops.breed.prot.sel.RandomSelection) RandomSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.RandomSelectionProblem) RandomSubsetSelection (class in pybrops.breed.prot.sel.RandomSelection) RandomSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.RandomSelectionProblem) rbv (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) RealGeneticAlgorithm (class in pybrops.opt.algo.RealGeneticAlgorithm) RealLookAheadGeneralizedWeightedGenomicSelectionProblem (class in pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem) RealMateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration) RealMateSelectionProblem (class in pybrops.breed.prot.sel.prob.RealMateSelectionProblem) RealMateSelectionProtocol (class in pybrops.breed.prot.sel.RealMateSelectionProtocol) RealMateSelectionSolution (class in pybrops.breed.prot.sel.soln.RealMateSelectionSolution) RealOptimizationAlgorithm (class in pybrops.opt.algo.RealOptimizationAlgorithm) RealProblem (class in pybrops.opt.prob.RealProblem) RealSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.RealSelectionConfiguration) RealSelectionProblem (class in pybrops.breed.prot.sel.prob.RealSelectionProblem) RealSelectionProtocol (class in pybrops.breed.prot.sel.RealSelectionProtocol) RealSelectionSolution (class in pybrops.breed.prot.sel.soln.RealSelectionSolution) RealSolution (class in pybrops.opt.soln.RealSolution) recurrent_axis (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) RecurrentSelectionBreedingProgram (class in pybrops.breed.arch.RecurrentSelectionBreedingProgram) reduced_exchange() (pybrops.opt.algo.pymoo_addon.MutatorA method) (pybrops.opt.algo.pymoo_addon.MutatorB method) (pybrops.opt.algo.pymoo_addon.MutatorF method) (pybrops.opt.algo.pymoo_addon.StochasticHillClimberMutation method) ReducedExchangeCrossover (class in pybrops.opt.algo.pymoo_addon) ReducedExchangeMutation (class in pybrops.opt.algo.pymoo_addon) remove() (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) remove_discrepancies() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) remove_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) remove_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) remove_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) remove_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) reorder() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

reorder_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) reorder_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) reorder_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) rep (pybrops.breed.op.log.Logbook.Logbook property) replace (pybrops.opt.algo.pymoo_addon.SubsetRandomSampling property) replace_nan_values_by (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) rescale() (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) reset() (pybrops.breed.arch.BreedingProgram.BreedingProgram method) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram method) (pybrops.breed.op.log.Logbook.Logbook method) rng (pybrops.breed.prot.mate.FourWayCross.FourWayCross property) (pybrops.breed.prot.mate.FourWayDHCross.FourWayDHCross property) (pybrops.breed.prot.mate.SelfCross.SelfCross property) (pybrops.breed.prot.mate.ThreeWayCross.ThreeWayCross property) (pybrops.breed.prot.mate.ThreeWayDHCross.ThreeWayDHCross property) (pybrops.breed.prot.mate.TwoWayCross.TwoWayCross property) (pybrops.breed.prot.mate.TwoWayDHCross.TwoWayDHCross property) (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin.SampledSelectionConfigurationMixin property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) (pybrops.opt.algo.BinaryGeneticAlgorithm.BinaryGeneticAlgorithm property) (pybrops.opt.algo.IntegerGeneticAlgorithm.IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2BinaryGeneticAlgorithm.NSGA2BinaryGeneticAlgorithm property) (pybrops.opt.algo.NSGA2IntegerGeneticAlgorithm.NSGA2IntegerGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorASubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2MutatorBSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2SteepestDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2MemeticSubsetGeneticAlgorithm.NSGA2StochasticDescentSubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA2RealGeneticAlgorithm.NSGA2RealGeneticAlgorithm property) (pybrops.opt.algo.NSGA2SubsetGeneticAlgorithm.NSGA2SubsetGeneticAlgorithm property) (pybrops.opt.algo.NSGA3SubsetGeneticAlgorithm.NSGA3SubsetGeneticAlgorithm property) (pybrops.opt.algo.RealGeneticAlgorithm.RealGeneticAlgorithm property) (pybrops.opt.algo.SteepestDescentSubsetHillClimber.SteepestDescentSubsetHillClimber property) (pybrops.opt.algo.SubsetGeneticAlgorithm.SubsetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm.UnconstrainedNSGA2SetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm.UnconstrainedSetGeneticAlgorithm property) (pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber.UnconstrainedSteepestAscentSetHillClimber property) rprob1g() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) rprob1p() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) rprob2g() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) rprob2p() (pybrops.popgen.gmap.GeneticMapFunction.GeneticMapFunction method) (pybrops.popgen.gmap.HaldaneMapFunction.HaldaneMapFunction method) (pybrops.popgen.gmap.KosambiMapFunction.KosambiMapFunction method) rprob_filial() (in module pybrops.model.vmat.util) rrBLUP_ML0() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_d_V() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_etasq() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_G() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_ridge() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_Zty() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_calc_ZtZplI() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_center_y() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_neg2LogLik_fast() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUP_ML0_nonzero_d_V() (in module pybrops.model.gmod.rrBLUPModel0) rrBLUPModel0 (class in pybrops.model.gmod.rrBLUPModel0)

S

sample_xconfig() (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration method) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin.SampledSelectionConfigurationMixin method) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration method) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration method) SampledSelectionConfigurationMixin (class in pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin) scale (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.ScaledMatrix.ScaledMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) ScaledMatrix (class in pybrops.core.mat.ScaledMatrix) ScaledSquareTaxaTraitMatrix (class in pybrops.core.mat.ScaledSquareTaxaTraitMatrix) score() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) score_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) seed() (in module pybrops.core.random.prng) select() (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol method) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection method) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol method) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection method) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection method) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection method) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection method) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection method) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol method) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol method) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol method) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol method) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol method) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection method) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating method) (pybrops.breed.prot.sel.UnconstrainedSelectionProtocol.UnconstrainedSelectionProtocol method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection method) (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) select_phase() (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) select_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) select_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) select_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) selection_intensity (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) SelectionConfiguration (class in pybrops.breed.prot.sel.cfg.SelectionConfiguration) SelectionProblem (class in pybrops.breed.prot.sel.prob.SelectionProblem) SelectionProtocol (class in pybrops.breed.prot.sel.SelectionProtocol) SelectionSolution (class in pybrops.breed.prot.sel.soln.SelectionSolution) SelfCross (class in pybrops.breed.prot.mate.SelfCross) set_H2() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping method) set_h2() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping method) set_H2() (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol method) set_h2() (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol method) set_H2() (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping method) set_h2() (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping method) setspace (pybrops.opt.algo.pymoo_addon.MultiObjectiveSteepestDescentHillClimberMutation property) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticDescentHillClimberMutation property) (pybrops.opt.algo.pymoo_addon.MultiObjectiveStochasticHillClimberMutation property) (pybrops.opt.algo.pymoo_addon.MutatorA property) (pybrops.opt.algo.pymoo_addon.MutatorB property) (pybrops.opt.algo.pymoo_addon.MutatorF property) (pybrops.opt.algo.pymoo_addon.ReducedExchangeMutation property) (pybrops.opt.algo.pymoo_addon.StochasticHillClimberMutation property) (pybrops.opt.algo.pymoo_addon.SubsetRandomSampling property) SimpleMateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration) SimpleSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration) slice_to_list() (in module pybrops.core.util.subroutines) slice_to_range() (in module pybrops.core.util.subroutines) sliceaxisix() (in module pybrops.core.util.array) soalgo (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol property) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection property) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol property) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection property) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection property) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection property) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection property) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection property) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection property) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection property) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol property) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol property) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol property) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol property) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection property) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection property) soln_decn (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) soln_eqcv (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) soln_ineqcv (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) soln_obj (pybrops.breed.prot.sel.soln.BinaryMateSelectionSolution.BinaryMateSelectionSolution property) (pybrops.breed.prot.sel.soln.BinarySelectionSolution.BinarySelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerMateSelectionSolution.IntegerMateSelectionSolution property) (pybrops.breed.prot.sel.soln.IntegerSelectionSolution.IntegerSelectionSolution property) (pybrops.breed.prot.sel.soln.MateSelectionSolution.MateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealMateSelectionSolution.RealMateSelectionSolution property) (pybrops.breed.prot.sel.soln.RealSelectionSolution.RealSelectionSolution property) (pybrops.breed.prot.sel.soln.SelectionSolution.SelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution.SubsetMateSelectionSolution property) (pybrops.breed.prot.sel.soln.SubsetSelectionSolution.SubsetSelectionSolution property) (pybrops.opt.soln.BinarySolution.BinarySolution property) (pybrops.opt.soln.IntegerSolution.IntegerSolution property) (pybrops.opt.soln.RealSolution.RealSolution property) (pybrops.opt.soln.Solution.Solution property) (pybrops.opt.soln.SubsetSolution.SubsetSolution property) Solution (class in pybrops.opt.soln.Solution) sort() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

sort_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) sort_trait() (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) sort_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) SortableMatrix (class in pybrops.core.mat.SortableMatrix) SortingSteepestDescentSubsetHillClimber (class in pybrops.opt.algo.SortingSteepestDescentSubsetHillClimber) SortingSubsetOptimizationAlgorithm (class in pybrops.opt.algo.SortingSubsetOptimizationAlgorithm) sosolve() (pybrops.breed.prot.sel.BinaryMateSelectionProtocol.BinaryMateSelectionProtocol method) (pybrops.breed.prot.sel.BinarySelectionProtocol.BinarySelectionProtocol method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection method) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.FamilyEstimatedBreedingValueSelection.FamilyEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GeneralizedWeightedGenomicEstimatedBreedingValueSelection.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection method) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection method) (pybrops.breed.prot.sel.GenotypeBuilderSelection.GenotypeBuilderSubsetSelection method) (pybrops.breed.prot.sel.IntegerMateSelectionProtocol.IntegerMateSelectionProtocol method) (pybrops.breed.prot.sel.IntegerSelectionProtocol.IntegerSelectionProtocol method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicBinarySelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicIntegerSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicRealSelection method) (pybrops.breed.prot.sel.L2NormGenomicSelection.L2NormGenomicSubsetSelection method) (pybrops.breed.prot.sel.MateSelectionProtocol.MateSelectionProtocol method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityBinarySelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityIntegerSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygosityRealSelection method) (pybrops.breed.prot.sel.MeanExpectedHeterozygositySelection.MeanExpectedHeterozygositySubsetSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipBinarySelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipIntegerSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipRealSelection method) (pybrops.breed.prot.sel.MeanGenomicRelationshipSelection.MeanGenomicRelationshipSubsetSelection method) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection method) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection method) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection method) (pybrops.breed.prot.sel.OptimalPopulationValueSelection.OptimalPopulationValueSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection method) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomBinarySelection method) (pybrops.breed.prot.sel.RandomSelection.RandomIntegerSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomRealSelection method) (pybrops.breed.prot.sel.RandomSelection.RandomSubsetSelection method) (pybrops.breed.prot.sel.RealMateSelectionProtocol.RealMateSelectionProtocol method) (pybrops.breed.prot.sel.RealSelectionProtocol.RealSelectionProtocol method) (pybrops.breed.prot.sel.SelectionProtocol.SelectionProtocol method) (pybrops.breed.prot.sel.SubsetMateSelectionProtocol.SubsetMateSelectionProtocol method) (pybrops.breed.prot.sel.SubsetSelectionProtocol.SubsetSelectionProtocol method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection method) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicBinarySelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicIntegerSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicRealSelection method) (pybrops.breed.prot.sel.WeightedGenomicSelection.WeightedGenomicSubsetSelection method) spawn() (in module pybrops.core.random.prng) spline (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) spline_fill_value (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) spline_kind (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) sqarrayix() (in module pybrops.core.util.array) square_axes (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) square_axes_len (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareMatrix.SquareMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) square_taxa_axes (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) square_taxa_axes_len (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) square_trait_axes (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) square_trait_axes_len (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) SquareMatrix (class in pybrops.core.mat.SquareMatrix) SquareTaxaMatrix (class in pybrops.core.mat.SquareTaxaMatrix) SquareTaxaSquareTraitMatrix (class in pybrops.core.mat.SquareTaxaSquareTraitMatrix) SquareTaxaTraitMatrix (class in pybrops.core.mat.SquareTaxaTraitMatrix) SquareTraitMatrix (class in pybrops.core.mat.SquareTraitMatrix) srange() (in module pybrops.core.util.subroutines) sselect() (pybrops.breed.op.ssel.SurvivorSelectionOperator.SurvivorSelectionOperator method) sselop (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) StandardGeneticMap (class in pybrops.popgen.gmap.StandardGeneticMap) start_bval (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) start_geno (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) start_genome (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) start_gmod (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) start_pheno (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) SteepestDescentSubsetHillClimber (class in pybrops.opt.algo.SteepestDescentSubsetHillClimber) stochastic_universal_sampling() (in module pybrops.core.random.sampling) StochasticHillClimberMutation (class in pybrops.opt.algo.pymoo_addon) strict (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) SubsetGeneticAlgorithm (class in pybrops.opt.algo.SubsetGeneticAlgorithm) SubsetMateSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration) SubsetMateSelectionProblem (class in pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem) SubsetMateSelectionProtocol (class in pybrops.breed.prot.sel.SubsetMateSelectionProtocol) SubsetMateSelectionSolution (class in pybrops.breed.prot.sel.soln.SubsetMateSelectionSolution) SubsetOptimizationAlgorithm (class in pybrops.opt.algo.SubsetOptimizationAlgorithm) SubsetProblem (class in pybrops.opt.prob.SubsetProblem) SubsetRandomSampling (class in pybrops.opt.algo.pymoo_addon) SubsetSelectionConfiguration (class in pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration) SubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.SubsetSelectionProblem) SubsetSelectionProtocol (class in pybrops.breed.prot.sel.SubsetSelectionProtocol) SubsetSelectionSolution (class in pybrops.breed.prot.sel.soln.SubsetSelectionSolution) SubsetSolution (class in pybrops.opt.soln.SubsetSolution) SurvivorSelectionOperator (class in pybrops.breed.op.ssel.SurvivorSelectionOperator)

T

t_cur (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) t_max (pybrops.breed.arch.BreedingNode.BreedingNode property) (pybrops.breed.arch.BreedingProgram.BreedingProgram property) (pybrops.breed.arch.GermplasmBank.GermplasmBank property) (pybrops.breed.arch.RecurrentSelectionBreedingProgram.RecurrentSelectionBreedingProgram property) tacount() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) tafreq() (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) target (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSelectionMixin property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) target_negative() (in module pybrops.breed.prot.sel.targetfn) target_positive() (in module pybrops.breed.prot.sel.targetfn) target_stabilizing() (in module pybrops.breed.prot.sel.targetfn) targmax() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) targmin() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) taxa (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_axis (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_col (pybrops.breed.prot.bv.MeanPhenotypicBreedingValue.MeanPhenotypicBreedingValue property) taxa_grp (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_grp_col (pybrops.breed.prot.bv.MeanPhenotypicBreedingValue.MeanPhenotypicBreedingValue property) taxa_grp_len (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_grp_name (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_grp_spix (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) taxa_grp_stix (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.TaxaMatrix.TaxaMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix property) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix property) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix property) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix property) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix property) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property)

TaxaMatrix (class in pybrops.core.mat.TaxaMatrix) TaxaTraitMatrix (class in pybrops.core.mat.TaxaTraitMatrix) TaxaVariantMatrix (class in pybrops.core.mat.TaxaVariantMatrix) tfreq (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) tfreq_fix_heter (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) tfreq_fix_major (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) tfreq_fix_minor (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) thcount() (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) thet (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) thfreq() (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) ThreeWayCross (class in pybrops.breed.prot.mate.ThreeWayCross) ThreeWayDHCross (class in pybrops.breed.prot.mate.ThreeWayDHCross) tiled_choice() (in module pybrops.core.random.sampling) (in module pybrops.opt.algo.pymoo_addon) tmajor (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) tmax() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) tmean() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) tmin() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) tminor (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySelectionProblemMixin property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) to_csv() (pybrops.core.io.CSVInputOutput.CSVInputOutput method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) to_csv_dict() (pybrops.core.io.CSVDictInputOutput.CSVDictInputOutput method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) to_dict() (pybrops.core.io.DictInputOutput.DictInputOutput method) to_egmap() (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) to_hdf5() (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping method) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol method) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping method) (pybrops.core.io.HDF5InputOutput.HDF5InputOutput method) (pybrops.core.mat.DenseMatrix.DenseMatrix method) (pybrops.core.mat.DenseMutableMatrix.DenseMutableMatrix method) (pybrops.core.mat.DensePhasedMatrix.DensePhasedMatrix method) (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareMatrix.DenseSquareMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.Matrix.Matrix method) (pybrops.core.mat.MutableMatrix.MutableMatrix method) (pybrops.core.mat.PhasedMatrix.PhasedMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.PrunableMatrix.PrunableMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SortableMatrix.SortableMatrix method) (pybrops.core.mat.SquareMatrix.SquareMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.TraitMatrix.TraitMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) to_npy() (pybrops.core.io.NPYInputOutput.NPYInputOutput method) to_npz() (pybrops.core.io.NPZInputOutput.NPZInputOutput method) to_numpy() (pybrops.core.io.NumPyInputOutput.NumPyInputOutput method) to_pandas() (pybrops.core.io.PandasInputOutput.PandasInputOutput method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) to_pandas_dict() (pybrops.core.io.PandasDictInputOutput.PandasDictInputOutput method) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) trait (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.GenomicModel.GenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) trait_axis (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix property) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix property) (pybrops.core.mat.DenseSquareTraitMatrix.DenseSquareTraitMatrix property) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix property) (pybrops.core.mat.DenseTraitMatrix.DenseTraitMatrix property) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix property) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix property) (pybrops.core.mat.SquareTraitMatrix.SquareTraitMatrix property) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix property) (pybrops.core.mat.TraitMatrix.TraitMatrix property) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix property) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix property) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix property) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix property) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix property) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix property) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix property) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix property) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix property) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix property) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix property) trait_cols (pybrops.breed.prot.bv.MeanPhenotypicBreedingValue.MeanPhenotypicBreedingValue property) TraitMatrix (class in pybrops.core.mat.TraitMatrix) trange() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) trans_decnvec_sum_eq() (in module pybrops.breed.prot.sel.prob.trans) trans_dot() (in module pybrops.breed.prot.sel.prob.trans) (in module pybrops.breed.prot.sel.transfn) trans_empty() (in module pybrops.breed.prot.sel.prob.trans) trans_flatten() (in module pybrops.breed.prot.sel.transfn) trans_identity() (in module pybrops.breed.prot.sel.prob.trans) trans_identity_unconstrained() (in module pybrops.breed.prot.sel.transfn) trans_inbmax_penalty() (in module pybrops.breed.prot.sel.transfn) trans_max_inbreeding_constraint() (in module pybrops.breed.prot.sel.transfn) trans_ndpt_pseudo_dist() (in module pybrops.core.util.trans) trans_ndpt_to_vec_dist() (in module pybrops.breed.prot.sel.prob.trans) (in module pybrops.breed.prot.sel.transfn) trans_sum() (in module pybrops.breed.prot.sel.prob.trans) (in module pybrops.breed.prot.sel.transfn) trans_sum_inbmax_penalty() (in module pybrops.breed.prot.sel.transfn) transform() (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) triudix() (in module pybrops.core.util.array) triuix() (in module pybrops.core.util.array) TrueBreedingValue (class in pybrops.breed.prot.bv.TrueBreedingValue) TruePhenotyping (class in pybrops.breed.prot.pt.TruePhenotyping) tstd() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) tvar() (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) TwoWayCross (class in pybrops.breed.prot.mate.TwoWayCross) TwoWayDHCross (class in pybrops.breed.prot.mate.TwoWayDHCross)

U

u (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel property) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) u_a (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) u_c (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) u_d (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) u_i (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) u_misc (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel property) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel property) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel property) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel property) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 property) ucmat (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) UnconstrainedNSGA2SetGeneticAlgorithm (class in pybrops.opt.algo.UnconstrainedNSGA2SetGeneticAlgorithm) UnconstrainedOptimizationAlgorithm (class in pybrops.opt.algo.UnconstrainedOptimizationAlgorithm) UnconstrainedSelectionProtocol (class in pybrops.breed.prot.sel.UnconstrainedSelectionProtocol) UnconstrainedSetGeneticAlgorithm (class in pybrops.opt.algo.UnconstrainedSetGeneticAlgorithm) UnconstrainedSteepestAscentSetHillClimber (class in pybrops.opt.algo.UnconstrainedSteepestAscentSetHillClimber) ungroup() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.GroupableMatrix.GroupableMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap method) (pybrops.popgen.gmap.GeneticMap.GeneticMap method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) ungroup_taxa() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseSquare2TaxaTraitMatrix.DenseSquare2TaxaTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaMatrix.DenseSquareTaxaMatrix method) (pybrops.core.mat.DenseSquareTaxaSquareTraitMatrix.DenseSquareTaxaSquareTraitMatrix method) (pybrops.core.mat.DenseSquareTaxaTraitMatrix.DenseSquareTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaMatrix.DenseTaxaMatrix method) (pybrops.core.mat.DenseTaxaTraitMatrix.DenseTaxaTraitMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.SquareTaxaMatrix.SquareTaxaMatrix method) (pybrops.core.mat.SquareTaxaSquareTraitMatrix.SquareTaxaSquareTraitMatrix method) (pybrops.core.mat.SquareTaxaTraitMatrix.SquareTaxaTraitMatrix method) (pybrops.core.mat.TaxaMatrix.TaxaMatrix method) (pybrops.core.mat.TaxaTraitMatrix.TaxaTraitMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGeneticCovarianceMatrix.AdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.AdditiveProgenyGenicCovarianceMatrix.AdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGeneticCovarianceMatrix.DenseAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseAdditiveProgenyGenicCovarianceMatrix.DenseAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix.DenseDihybridDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix.DenseDihybridDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseFourWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix.DenseFourWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGeneticCovarianceMatrix.DenseProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseProgenyGenicCovarianceMatrix.DenseProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix.DenseThreeWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix.DenseTwoWayDHAdditiveProgenyGenicCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGeneticCovarianceMatrix.ProgenyGeneticCovarianceMatrix method) (pybrops.model.pcvmat.ProgenyGenicCovarianceMatrix.ProgenyGenicCovarianceMatrix method) (pybrops.model.vmat.AdditiveGeneticVarianceMatrix.AdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.AdditiveGenicVarianceMatrix.AdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGeneticVarianceMatrix.DenseAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseAdditiveGenicVarianceMatrix.DenseAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGeneticVarianceMatrix.DenseDihybridDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseDihybridDHAdditiveGenicVarianceMatrix.DenseDihybridDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGeneticVarianceMatrix.DenseFourWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseFourWayDHAdditiveGenicVarianceMatrix.DenseFourWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseGeneticVarianceMatrix.DenseGeneticVarianceMatrix method) (pybrops.model.vmat.DenseGenicVarianceMatrix.DenseGenicVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGeneticVarianceMatrix.DenseThreeWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseThreeWayDHAdditiveGenicVarianceMatrix.DenseThreeWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGeneticVarianceMatrix.DenseTwoWayDHAdditiveGeneticVarianceMatrix method) (pybrops.model.vmat.DenseTwoWayDHAdditiveGenicVarianceMatrix.DenseTwoWayDHAdditiveGenicVarianceMatrix method) (pybrops.model.vmat.GeneticVarianceMatrix.GeneticVarianceMatrix method) (pybrops.model.vmat.GenicVarianceMatrix.GenicVarianceMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.cmat.CoancestryMatrix.CoancestryMatrix method) (pybrops.popgen.cmat.DenseCoancestryMatrix.DenseCoancestryMatrix method) (pybrops.popgen.cmat.DenseGeneralizedWeightedCoancestryMatrix.DenseGeneralizedWeightedCoancestryMatrix method) (pybrops.popgen.cmat.DenseMolecularCoancestryMatrix.DenseMolecularCoancestryMatrix method) (pybrops.popgen.cmat.DenseVanRadenCoancestryMatrix.DenseVanRadenCoancestryMatrix method) (pybrops.popgen.cmat.DenseYangCoancestryMatrix.DenseYangCoancestryMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method)

ungroup_vrnt() (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix method) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix method) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix method) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix method) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix method) (pybrops.core.mat.VariantMatrix.VariantMatrix method) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix method) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix method) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix method) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix method) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix method) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix method) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix method) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix method) unique_parents (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueBinarySelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueRealSelection property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.ExpectedMaximumBreedingValueSelection.ExpectedMaximumBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueBinarySelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueIntegerSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueRealSelection property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSelectionMixin property) (pybrops.breed.prot.sel.OptimalHaploidValueSelection.OptimalHaploidValueSubsetSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) unscale (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.EstimatedBreedingValueSelection.EstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueBinarySelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueIntegerSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueRealSelection property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSelectionMixin property) (pybrops.breed.prot.sel.GenomicEstimatedBreedingValueSelection.GenomicEstimatedBreedingValueSubsetSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionBinarySelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionIntegerSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionRealSelection property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSelectionMixin property) (pybrops.breed.prot.sel.OptimalContributionSelection.OptimalContributionSubsetSelection property) unscale() (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) (pybrops.model.embvmat.DenseExpectedMaximumBreedingValueMatrix.DenseExpectedMaximumBreedingValueMatrix method) (pybrops.model.embvmat.ExpectedMaximumBreedingValueMatrix.ExpectedMaximumBreedingValueMatrix method) (pybrops.model.wgebvmat.DenseWeightedGenomicEstimatedBreedingValueMatrix.DenseWeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix.WeightedGenomicEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.BreedingValueMatrix.BreedingValueMatrix method) (pybrops.popgen.bvmat.DenseBreedingValueMatrix.DenseBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseEstimatedBreedingValueMatrix.DenseEstimatedBreedingValueMatrix method) (pybrops.popgen.bvmat.DenseGenomicEstimatedBreedingValueMatrix.DenseGenomicEstimatedBreedingValueMatrix method) untransform() (pybrops.core.mat.DenseScaledMatrix.DenseScaledMatrix method) (pybrops.core.mat.DenseScaledSquareTaxaTraitMatrix.DenseScaledSquareTaxaTraitMatrix method) (pybrops.core.mat.ScaledMatrix.ScaledMatrix method) (pybrops.core.mat.ScaledSquareTaxaTraitMatrix.ScaledSquareTaxaTraitMatrix method) upper_percentile (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) UsefulnessCriterionBinaryMateSelectionProblem (class in pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem) UsefulnessCriterionBinarySelection (class in pybrops.breed.prot.sel.UsefulnessCriterionSelection) UsefulnessCriterionIntegerMateSelectionProblem (class in pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem) UsefulnessCriterionIntegerSelection (class in pybrops.breed.prot.sel.UsefulnessCriterionSelection) UsefulnessCriterionRealMateSelectionProblem (class in pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem) UsefulnessCriterionRealSelection (class in pybrops.breed.prot.sel.UsefulnessCriterionSelection) UsefulnessCriterionSelectionMixin (class in pybrops.breed.prot.sel.UsefulnessCriterionSelection) UsefulnessCriterionSelectionProblemMixin (class in pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem) UsefulnessCriterionSubsetMateSelectionProblem (class in pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem) UsefulnessCriterionSubsetSelection (class in pybrops.breed.prot.sel.UsefulnessCriterionSelection) usl() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) usl_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method)

V

V (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSelectionProblemMixin property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) var_A() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) var_a() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) var_A() (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) var_a() (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) var_A() (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) var_a() (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) var_A() (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) var_a() (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) var_A() (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) var_a() (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) var_A() (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) var_a() (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) var_A() (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) var_a() (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) var_A() (pybrops.model.gmod.GenomicModel.GenomicModel method) var_a() (pybrops.model.gmod.GenomicModel.GenomicModel method) var_A() (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) var_a() (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) var_A() (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) var_a() (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) var_A() (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_a() (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_A_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.GenomicModel.GenomicModel method) var_a_numpy() (pybrops.model.gmod.GenomicModel.GenomicModel method) var_A_numpy() (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) var_a_numpy() (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) var_A_numpy() (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_a_numpy() (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_env (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) var_err (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) (pybrops.breed.prot.pt.PhenotypingProtocol.PhenotypingProtocol property) (pybrops.breed.prot.pt.TruePhenotyping.TruePhenotyping property) var_G() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_G_numpy() (pybrops.model.gmod.AdditiveDominanceEpistaticLinearGenomicModel.AdditiveDominanceEpistaticLinearGenomicModel method) (pybrops.model.gmod.AdditiveDominanceLinearGenomicModel.AdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.AdditiveLinearGenomicModel.AdditiveLinearGenomicModel method) (pybrops.model.gmod.CoancestryLinearGenomicModel.CoancestryLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveDominanceLinearGenomicModel.DenseAdditiveDominanceLinearGenomicModel method) (pybrops.model.gmod.DenseAdditiveLinearGenomicModel.DenseAdditiveLinearGenomicModel method) (pybrops.model.gmod.DenseLinearGenomicModel.DenseLinearGenomicModel method) (pybrops.model.gmod.GenomicModel.GenomicModel method) (pybrops.model.gmod.LinearGenomicModel.LinearGenomicModel method) (pybrops.model.gmod.NonlinearGenomicModel.NonlinearGenomicModel method) (pybrops.model.gmod.rrBLUPModel0.rrBLUPModel0 method) var_rep (pybrops.breed.prot.pt.G_E_Phenotyping.G_E_Phenotyping property) VariantMatrix (class in pybrops.core.mat.VariantMatrix) vars (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property) vmatfcty (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionBinarySelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionIntegerSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionRealSelection property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSelectionMixin property) (pybrops.breed.prot.sel.UsefulnessCriterionSelection.UsefulnessCriterionSubsetSelection property) vrnt_axis (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_chrgrp (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_chrgrp_len (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_chrgrp_name (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_chrgrp_spix (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property)

vrnt_chrgrp_stix (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_fncode (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) vrnt_genpos (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_hapalt (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_hapgrp (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_hapref (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_mask (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_name (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_phypos (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) (pybrops.popgen.gmap.GeneticMap.GeneticMap property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmap.StandardGeneticMap.StandardGeneticMap property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vrnt_stop (pybrops.popgen.gmap.ExtendedGeneticMap.ExtendedGeneticMap property) vrnt_xoprob (pybrops.core.mat.DensePhasedTaxaVariantMatrix.DensePhasedTaxaVariantMatrix property) (pybrops.core.mat.DenseTaxaVariantMatrix.DenseTaxaVariantMatrix property) (pybrops.core.mat.DenseVariantMatrix.DenseVariantMatrix property) (pybrops.core.mat.PhasedTaxaVariantMatrix.PhasedTaxaVariantMatrix property) (pybrops.core.mat.TaxaVariantMatrix.TaxaVariantMatrix property) (pybrops.core.mat.VariantMatrix.VariantMatrix property) (pybrops.popgen.gmap.DenseGeneticMappableMatrix.DenseGeneticMappableMatrix property) (pybrops.popgen.gmap.GeneticMappableMatrix.GeneticMappableMatrix property) (pybrops.popgen.gmat.DenseGenotypeMatrix.DenseGenotypeMatrix property) (pybrops.popgen.gmat.DensePhasedGenotypeMatrix.DensePhasedGenotypeMatrix property) (pybrops.popgen.gmat.GenotypeMatrix.GenotypeMatrix property) (pybrops.popgen.gmat.HaplotypeMatrix.HaplotypeMatrix property) (pybrops.popgen.gmat.PhasedGenotypeMatrix.PhasedGenotypeMatrix property) (pybrops.popgen.gmat.PhasedHaplotypeMatrix.PhasedHaplotypeMatrix property) vtype (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property)

W

weight (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSelectionMixin property) (pybrops.breed.prot.sel.MultiObjectiveGenomicSelection.MultiObjectiveGenomicSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleFrequencyDistanceSelection.PopulationAlleleFrequencyDistanceSubsetSelection property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySelectionMixin property) (pybrops.breed.prot.sel.PopulationAlleleUnavailabilitySelection.PopulationAlleleUnavailabilitySubsetSelection property) (pybrops.breed.prot.sel.UnconstrainedGeneralized1NormGenomicSelection.Generalized1NormGenomicSelection property) (pybrops.breed.prot.sel.UnconstrainedMultiObjectiveGenomicMating.MultiObjectiveGenomicMating property) weight_absolute() (in module pybrops.breed.prot.sel.weightfn) weight_one() (in module pybrops.breed.prot.sel.weightfn) WeightedGenomicBinarySelection (class in pybrops.breed.prot.sel.WeightedGenomicSelection)

WeightedGenomicBinarySelectionProblem (class in pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem) WeightedGenomicEstimatedBreedingValueMatrix (class in pybrops.model.wgebvmat.WeightedGenomicEstimatedBreedingValueMatrix) WeightedGenomicIntegerSelection (class in pybrops.breed.prot.sel.WeightedGenomicSelection) WeightedGenomicIntegerSelectionProblem (class in pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem) WeightedGenomicRealSelection (class in pybrops.breed.prot.sel.WeightedGenomicSelection) WeightedGenomicRealSelectionProblem (class in pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem) WeightedGenomicSubsetSelection (class in pybrops.breed.prot.sel.WeightedGenomicSelection) WeightedGenomicSubsetSelectionProblem (class in pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem) write() (pybrops.breed.op.log.Logbook.Logbook method) wt (pybrops.opt.prob.FunctionWeight.FunctionWeight property) (pybrops.opt.prob.FunctionWeight.MaximizingFunctionWeight property) (pybrops.opt.prob.FunctionWeight.MinimizingFunctionWeight property)

X

xconfig (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SelectionConfiguration.SelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleSelectionConfiguration.SimpleSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) xconfig_decn (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.BinarySelectionConfiguration.BinarySelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerSelectionConfiguration.IntegerSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealSelectionConfiguration.RealSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SampledSelectionConfigurationMixin.SampledSelectionConfigurationMixin property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetSelectionConfiguration.SubsetSelectionConfiguration property) xconfig_xmap (pybrops.breed.prot.sel.cfg.BinaryMateSelectionConfiguration.BinaryMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.IntegerMateSelectionConfiguration.IntegerMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.MateSelectionConfiguration.MateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.RealMateSelectionConfiguration.RealMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SimpleMateSelectionConfiguration.SimpleMateSelectionConfiguration property) (pybrops.breed.prot.sel.cfg.SubsetMateSelectionConfiguration.SubsetMateSelectionConfiguration property) xl (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property)

xmap (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicMatingProblemMixin property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) xmapix() (in module pybrops.core.util.array) xu (pybrops.breed.prot.sel.prob.BinaryMateSelectionProblem.BinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.BinarySelectionProblem.BinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.EstimatedBreedingValueSelectionProblem.EstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.ExpectedMaximumBreedingValueSelectionProblem.ExpectedMaximumBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.FamilyEstimatedBreedingValueSelectionProblem.FamilyEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GeneralizedWeightedGenomicEstimatedBreedingValueSelectionProblem.GeneralizedWeightedGenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.GenomicEstimatedBreedingValueSelectionProblem.GenomicEstimatedBreedingValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.GenotypeBuilderSelectionProblem.GenotypeBuilderSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerMateSelectionProblem.IntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.IntegerSelectionProblem.IntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L1NormGenomicSelectionProblem.L1NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.L2NormGenomicSelectionProblem.L2NormGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MateSelectionProblem.MateSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygosityRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanExpectedHeterozygositySelectionProblem.MeanExpectedHeterozygositySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipRealSelectionProblem property) (pybrops.breed.prot.sel.prob.MeanGenomicRelationshipSelectionProblem.MeanGenomicRelationshipSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicMatingProblem.MultiObjectiveGenomicSubsetMatingProblem property) (pybrops.breed.prot.sel.prob.MultiObjectiveGenomicSelectionProblem.MultiObjectiveGenomicSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalContributionSelectionProblem.OptimalContributionSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueRealSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalHaploidValueSelectionProblem.OptimalHaploidValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.OptimalPopulationValueSelectionProblem.OptimalPopulationValueSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleFrequencyDistanceSelectionProblem.PopulationAlleleFrequencyDistanceSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.PopulationAlleleUnavailabilitySelectionProblem.PopulationAlleleUnavailabilitySubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomRealSelectionProblem property) (pybrops.breed.prot.sel.prob.RandomSelectionProblem.RandomSubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.RealLookAheadGeneralizedWeightedGenomicSelectionProblem.RealLookAheadGeneralizedWeightedGenomicSelectionProblem property) (pybrops.breed.prot.sel.prob.RealMateSelectionProblem.RealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.RealSelectionProblem.RealSelectionProblem property) (pybrops.breed.prot.sel.prob.SelectionProblem.SelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetMateSelectionProblem.SubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.SubsetSelectionProblem.SubsetSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionBinaryMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionIntegerMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionRealMateSelectionProblem property) (pybrops.breed.prot.sel.prob.UsefulnessCriterionSelectionProblem.UsefulnessCriterionSubsetMateSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicBinarySelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicIntegerSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicRealSelectionProblem property) (pybrops.breed.prot.sel.prob.WeightedGenomicSelectionProblem.WeightedGenomicSubsetSelectionProblem property) (pybrops.opt.prob.BinaryProblem.BinaryProblem property) (pybrops.opt.prob.IntegerProblem.IntegerProblem property) (pybrops.opt.prob.Problem.Problem property) (pybrops.opt.prob.RealProblem.RealProblem property) (pybrops.opt.prob.SubsetProblem.SubsetProblem property)